Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4330 ATGCAAACATATAGTAATCATCTAGGAGAAGGTTGTGTATTCCATCTTGAACTCACCGACCAAGATGGTACTCAGATTCAATCAACTCTGCTTAATGATGTTGCAAGGAAGTTTTATGACAAATTTGTTATGGGAAAGGTTTATTATATTTCAAAAGGAACTTTGGTACCTACATACCAACACTGCAAAATTGTGCCAAATGATTATGAAATAAGACTGAATGTGAATTCTGAGGTGGAAGAGGTTGCCAATGAAGCTGTTTTTGTTCCAGAGATTAAATTCAATTTTGTTCCAATTGATCAGTTGGGTCATCATGCCAATAAGCCTGATCTTGTTAATGTTGTTGGAGTTGTTACGAATGTGTCTTCAAGAATGAGCATTAGAAGGAGGAGTAACAATGAGAGTATCCACAAGCGTAACATTACTATCACTGATGAAACCAAGAAGACAGTTGTTGTGTCTCTGTGGTTTGATCTTGCAACTAACATAGGACGAGAGTTACTGGCCATTGCTGATAAATCCCCAGTAGTTGCGTTCAAATCCCTCAAGGTTTGGGACTTTCAAGGTGTTTCTCTGTCAGCTATTAGCAGAAGTTTAGTTATGATAAATCCAGATATACCTGAGGCTCAGAAGCTCAGATGCTGGTATGATTCTGAAGGTAAGGATGCTGCAATGGCTGCTTTAAGCTCTGGTTCAACTCCATCATCTAACAGTGGAAGTACATCAGTTTACTCTGACTGTGTTCCACTTTCTCACATAACATCTAACCCCTCCTTGGGGGCTGAGACGCCTGCATTCTTCACTATCAGAGGATATATCAGTTTCATAAGGCCAGATCAGGCAATGTGGTATTGTGCCTGTAAGAATTGCAACAAGAAACTTACTGAAAGCATGGGTGAAGGGTACCGGTGTGAAAGTTGCCAGGAAAACGATGACGAATGCAATTTAAGATATATTATAGTTGCAAGAGTTAGAGATGAAAGTGGTGAGGCTCATATATCTTTCTTCAATGAGGAAGCTGAGAAGATCATTGGGTGCTCTGCTGACGAGCTAGACGACCTTAGATCACAGGAGGGAGAAGAGAATCCTTATCAAATGAAATTGAAGCAAGCTACTTGGATTCCACACCTCTTGCGAGTTAGTGTTTCTCAGAATGAGTATAATAACGAGAAGAGGCAAAGGATAACAGCACAGGCAGTTGTTCCTGTTGACTTCGCTGCGGAGTGTAAATCTCTCCTTGAAGACATATCAAAGATGACAATCTCTCAATGA 1272 0.4025 MQTYSNHLGEGCVFHLELTDQDGTQIQSTLLNDVARKFYDKFVMGKVYYISKGTLVPTYQHCKIVPNDYEIRLNVNSEVEEVANEAVFVPEIKFNFVPIDQLGHHANKPDLVNVVGVVTNVSSRMSIRRRSNNESIHKRNITITDETKKTVVVSLWFDLATNIGRELLAIADKSPVVAFKSLKVWDFQGVSLSAISRSLVMINPDIPEAQKLRCWYDSEGKDAAMAALSSGSTPSSNSGSTSVYSDCVPLSHITSNPSLGAETPAFFTIRGYISFIRPDQAMWYCACKNCNKKLTESMGEGYRCESCQENDDECNLRYIIVARVRDESGEAHISFFNEEAEKIIGCSADELDDLRSQEGEENPYQMKLKQATWIPHLLRVSVSQNEYNNEKRQRITAQAVVPVDFAAECKSLLEDISKMTISQ* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4330 423 Gene3D - 1 84 IPR012340 -
Mal5g4330 423 SUPERFAMILY Nucleic acid-binding proteins 3 84 IPR012340 -
Mal5g4330 423 CDD RPA1_DBD_A 1 81 - -
Mal5g4330 423 Gene3D - 230 419 IPR012340 -
Mal5g4330 423 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 1 417 - -
Mal5g4330 423 CDD RPA1_DBD_B 132 217 - -
Mal5g4330 423 Gene3D - 89 229 IPR012340 -
Mal5g4330 423 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 2 418 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal5g4330 423 Pfam Replication protein A OB domain 105 203 IPR031657 -
Mal5g4330 423 SUPERFAMILY Nucleic acid-binding proteins 94 221 IPR012340 -
Mal5g4330 423 SUPERFAMILY Nucleic acid-binding proteins 246 419 IPR012340 -
Mal5g4330 423 PANTHER REPLICATION FACTOR A 1, RFA1 1 417 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal5g4330 423 CDD RPA1_DBD_C 250 418 IPR013955 -
Mal5g4330 423 Pfam Replication factor-A C terminal domain 266 412 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4330 Mal-Chr5 114507724 114509993 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4330 1 423 Core DNA Replication Machinery Family AT5G08020 64.539 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4330 K07466 - qsu:112017680 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4330 5 114507724 114509993 Mal5g4330 5 114507724 114509993 ECH