Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4328 ATGGCGAAATCTGTCTCCCCAAACGCCATCTCCACCTTGCTTTCAAATCCATCCCCTGATTCTTCATCAGATCTCCCTGACATCGTTGTTCAAGTTCTCGATCTCAAACAATCCGGCAACAGATACATGTTTTCTGCTAGTGATGGAAAAATGAAACTAAGAGCAATTCTTCCTTCGAATCAGTACTCAGAGGTTCTATCAGGGAAGATTCAAAACCTTGGACTCATTCGGATCCTTGATTATACTCTGAACGATATCCCTAACAAATCTGAGAAGTATCTTATTGTGACCAAGTGTGAACCGGTTTCTCCTGCGCTGGAAATGGAGATCAAGAGTGAAGAATCGGGTATCACATTGAAGCCAAAGGAAGATGTTGTTGTTAAGAGGGAAAGTGCTCCTGGGATTGTTCTAAAGCCGAAGCAGGATGTGGTTTCAAAATCTGCTGCTCAGATCTTGCATGAGCAACATGGAAATTCGGCTCCTGCTGGGAGAATGGCTATGACACGTAGAGTGCGTCCTCTTGTTTCTTTGAATCCTTATATGGGTAATTGGACTATCAAGGTCAGTGTTACAAGCAAAGGAACAATGCGTACCTATAAGAATGCTAGAGGTGAAGGTTGTGTGTTCAATGTTGAATTGACTGATGAAGATGGTACCCAGATTCAAGCAACTATGTTTAATGAAGCTGCAAGGAAGTTTTATGATAGATTTGTTGTTGGAAAGGTTTATTATATCTCAAAAGGAACTCTGAAAGTTGCTAACAAACAGTTCAAAACTGTGCAAAATGATTATGAAATGACATTGAATGAGAATTCTGAGGTGGAAGAGGTTGCCAATGAAGCTGCTTTTGTTCCAGAGACTAAATTCAATTTTGTCCCAATTGATCAGTTGGGTCCTTATGTGAATAAGTCTGACCTTGTTGATGTTGTTGGAGTTGTGAAGAATGTGTCTTCAACCATGAGCATCAGAAGAAAGAGCAACAATGAGACTGTTCCTAAGCGTGACATTACTATTGCTGATGAAACCAAGAATACAGTTGTTGTGTCTTTGTGGGGTGATCTTGCAACTAACATAGGACAAGAGTTACTGGACATGGCTGATAAATCTCCAGTAGTTGCAATCAAATCCCTCAAGGTTGGGGACTTTCAAGGTGTTTCTTTGTCAGCTATTAGCAGAAGTTTAGTTCTGATCAATCCAGAAGTAGCTGAAGCTCAGAGGCTTAGATCCTGGTATGATACTGAAGGTAAGGATGCTTCAATGACCACTGTAAGCTCTGGTTCAACTCCATCATCTAACAGTGGAAGTAGATCAGTTTACTCTGACCGTGTTCCACTTTCTCATATAACCTCTAACCTCTCTTTGGGAGCTGAGAAGCCTGCATTCTTTAGCATCAGAGGGTATATCAGTTTCATAAAGCCAGATCAGGCAATGTGGTATCGTGCCTGTAAGACTTGCAACAAGAAAGTTACTGAAAGCACGGATGCTGGGTACTGGTGTGAAAGTTGCCAGAAAAATGACAAAGAATGCAATTTAAGATATATTATGGTTGCAAAAGTTTTTGATGCAACTGGTGATGCTTTTATATCTACCTTCAATGAAGAAGCCGAGAAGATTATCGGGTGCTCTGCTGATGAGCTAGACAACCTTAGATCACAGGAAGGAGAAGAGAATCCTTATCAATTGAAATTGAAGGAAGCTACTTGGACTCAACACCTCTTTCGTGTTAGTGTTTCTCAGAATGAGTATAATAACGAGAAGAGGCAAAGGATAACAGCACGAGCAGTTGTTCCTGTGGACTTTGTTGCAGAGTCTAAATTTCTCCTTGAAGACATATCAAAGATGACCGCCTCTCACTAA 1857 0.4087 MAKSVSPNAISTLLSNPSPDSSSDLPDIVVQVLDLKQSGNRYMFSASDGKMKLRAILPSNQYSEVLSGKIQNLGLIRILDYTLNDIPNKSEKYLIVTKCEPVSPALEMEIKSEESGITLKPKEDVVVKRESAPGIVLKPKQDVVSKSAAQILHEQHGNSAPAGRMAMTRRVRPLVSLNPYMGNWTIKVSVTSKGTMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFVVGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVANEAAFVPETKFNFVPIDQLGPYVNKSDLVDVVGVVKNVSSTMSIRRKSNNETVPKRDITIADETKNTVVVSLWGDLATNIGQELLDMADKSPVVAIKSLKVGDFQGVSLSAISRSLVLINPEVAEAQRLRSWYDTEGKDASMTTVSSGSTPSSNSGSRSVYSDRVPLSHITSNLSLGAEKPAFFSIRGYISFIKPDQAMWYRACKTCNKKVTESTDAGYWCESCQKNDKECNLRYIMVAKVFDATGDAFISTFNEEAEKIIGCSADELDNLRSQEGEENPYQLKLKEATWTQHLFRVSVSQNEYNNEKRQRITARAVVPVDFVAESKFLLEDISKMTASH* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4328 618 CDD RPA1_DBD_C 445 613 IPR013955 -
Mal5g4328 618 CDD RPA1_DBD_B 313 412 - -
Mal5g4328 618 Pfam Replication factor-A C terminal domain 461 607 IPR013955 -
Mal5g4328 618 Pfam Replication protein A OB domain 301 397 IPR031657 -
Mal5g4328 618 Coils Coil 532 552 - -
Mal5g4328 618 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 3 613 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal5g4328 618 MobiDBLite consensus disorder prediction 417 438 - -
Mal5g4328 618 Gene3D - 284 424 IPR012340 -
Mal5g4328 618 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mal5g4328 618 Gene3D - 425 614 IPR012340 -
Mal5g4328 618 CDD RPA1_DBD_A 173 276 - -
Mal5g4328 618 PANTHER REPLICATION FACTOR A 1, RFA1 5 612 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal5g4328 618 SUPERFAMILY Nucleic acid-binding proteins 172 280 IPR012340 -
Mal5g4328 618 MobiDBLite consensus disorder prediction 1 23 - -
Mal5g4328 618 SUPERFAMILY Nucleic acid-binding proteins 440 614 IPR012340 -
Mal5g4328 618 SUPERFAMILY Nucleic acid-binding proteins 289 417 IPR012340 -
Mal5g4328 618 Pfam OB-fold nucleic acid binding domain 185 270 IPR004365 GO:0003676
Mal5g4328 618 Gene3D - 4 112 IPR012340 -
Mal5g4328 618 Gene3D - 170 279 IPR012340 -
Mal5g4328 618 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 612 - -
Mal5g4328 618 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4328 Mal-Chr5 114491686 114494987 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4328 1 618 Core DNA Replication Machinery Family AT5G08020 69.952 0.0 920
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4328 K07466 - qsu:112017680 939.873