Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4325 ATGGCTTTCTTTGGTAAACTCGGAAATATTCTACGACAATCAGCAAACAGGAAGATTGTTTCGGAATTGCGTCCGGCCCCATCTGCTTTCCAGGCTATAAGATGCATGTGTTCTACTCCAACCACAAAGCTGTTTATTGGGGGTGTTTCATATTCAACTAATGAACAGAGTTTGAGGGATGCTTTTTCAAGATACGGTGAAGTTCTTGATGCAAGGATAATTATGGATCGTGAAACTGGTAGATCCAGAGGATTTGGCTTTATCACATTCAATTCAGTTGTGGAGGCATCTAGTGCCCTTCAGGCCTTGGATGGTCAGGACCTTGATGGTCGTCGGGTTAGGGTAAATTACGCTAATGAAAGGCCTCGTGTATATGGCGGTGGCGGTTCTTATGGCAATGCGCCATATGGCGGTGGAGCTGGGTATGCAGGTTCTTATAGTGGCTCTCCATACGGTGGTGCTTCAAGTGGAGGTGGCTATGGTGGAAATGTAGATGGAGGTTACGGGGGTGGTGGTTATGGTGGAGGCAGCTCTGTGCCTGGTGGCAATTATGGCGGCAGTGGTGCTGCCAACAACTATTCTGCTCCCAACAGTTTTGAAACTAGCAATGCAGGTAGTGGTACTGGCTCTGCTGGTGGATATGATGGAAGTGGGGTGAGTGGCCAATTTGATAGCAAAGACAGTGGTAATGTAAATGAGGATTTCGGAGGTGTTGGGGACTCGGACGAAGGAAATTATAGCGATGACAATGATGATACTGATAATTTTGCTAAAAGGGCCTGA 783 0.4687 MAFFGKLGNILRQSANRKIVSELRPAPSAFQAIRCMCSTPTTKLFIGGVSYSTNEQSLRDAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVVEASSALQALDGQDLDGRRVRVNYANERPRVYGGGGSYGNAPYGGGAGYAGSYSGSPYGGASSGGGYGGNVDGGYGGGGYGGGSSVPGGNYGGSGAANNYSAPNSFETSNAGSGTGSAGGYDGSGVSGQFDSKDSGNVNEDFGGVGDSDEGNYSDDNDDTDNFAKRA* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4325 260 MobiDBLite consensus disorder prediction 197 260 - -
Mal5g4325 260 CDD RRM_HP0827_like 43 119 - -
Mal5g4325 260 Gene3D - 12 137 IPR012677 -
Mal5g4325 260 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 259 - -
Mal5g4325 260 SMART rrm1_1 43 116 IPR000504 GO:0003723
Mal5g4325 260 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 259 - -
Mal5g4325 260 MobiDBLite consensus disorder prediction 197 229 - -
Mal5g4325 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Mal5g4325 260 PRINTS Eggshell protein signature 151 161 - -
Mal5g4325 260 PRINTS Eggshell protein signature 38 54 - -
Mal5g4325 260 PRINTS Eggshell protein signature 181 199 - -
Mal5g4325 260 PRINTS Eggshell protein signature 126 141 - -
Mal5g4325 260 SUPERFAMILY RNA-binding domain, RBD 38 133 IPR035979 GO:0003676
Mal5g4325 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4325 Mal-Chr5 114450974 114453161 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4325 44 122 C2H2 Transcription Factor Family AT2G19380 34.177 6.36e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4325 K12741 - gmx:100799124 199.519