Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4321 ATGGCATCGGCGAAGCGATGCCACTACGAAGTTCTCGGTATATCTCGCGACTGCTCACCGGAAGAACTCCGTTCAGCTTACCGGAAACTCGCCCTCCAGCGCCACCCAGACAAGCTCGTCAAATCAGGCCTCTCTCAATCCGAAGCCACCGCTCAGTTTCAGGAGCTACAACACGCTTATGAGGTCCTCTCCGATCCTAAGGAACGCGCTTGGTACGATTCTCACCGTTCTCAAATCCTCTTCTCCGATCCAAATTCCAGCTCTAATTCTGTTGTTCCTGACCTGTTTTCGTTTTTCTCGAATACCGTTTATACTGGTTATTCTGATTCCGGTAAGGGGTTTTACAAGGTTTATTCCGATGTGTTTGATAAAATTCAGGCGAATGAGATAAATTTTGCTAAGAAATTAGGTATAGGGGTTGATTCTGTTAGACAGGCTCCTCTTATGGGGAATTTGGATAGTCCTTATGCGCAGGTTACGGCTTTTTATAGTTATTGGTTGGGATTTTCGACGGTTATGGATTTTTGTTGGGCGGATGAGTATGATGCGATGGCTGGTCCGAATAGGAAGTCGCGGAGGTTGATGGAGGAAGAGAATATGAAGGTGAGGAGGAAGGCGAAGAGGGAGTATAATGATACTGTGAGGAAGTTGGCTGATTTTGTGAAGAAGAGGGATAAGAGAGTGATTGATATGAAGGTGAAGAAGAATTTGGAGATGGAGAAGAAGAAAGAGGAGGAGAAAGAGAGGAAGAGGAAGTTGGAGATGGAGAGGAAGGAGAGGGCAATGGCTTATGAGGAGCCTGATTGGGCTAAGGTTGATGAAGAAGAGGTTGAGGATTTGTATGAGGATGATGAGTTTGAGAAGAAAGATGAGAAAGAGTTTTATTGTGTGTTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAATGGAAGAACCATGAGCAGAGTAAGAAACATAAGGAGAAAGTTGCTGAGTTCAAGGATTCACTTGATGATGATGAGGAGGAGTTAGACGGTGAGGTGGATGAGGAAGGTGAAATTGAAAGAGAAGGAGAGGAGAGATTAGAAAGTGAGGAGGATGGAGTTGGGGTTGATGATTTGGAGGAGAGGATTCGAGATAGTCTTAATGTGGCAGAAGAGGGGAGTGCCGATGGGGTTGAACTGAATGATGATGGTGACAATGATGAATTTTTTGATGCTGACCATGAAAAAGATGGGGAGGAGAATGTTGTTAATGACGACGTCGATGATGATGAGAATGGTGTTCTTGAAACAATGGTAGGTGGGCACAAGGGCAGATTTGATTTTGATGAGAATGATGGTAGCGATGATGATGATGATGATGAAATCGGGGTTCTTGAAGCAATGCTGGCTGGACATAAGAGCAGAAAACCCAGTGCTTCAACACACGAGCCCGAGGCTTCTGTAACTCCAACTCAAATTGAGAGTGAGAATGAGAATGACAATGATGGCGTTGGTGCTATGGAATATAACAACCGAAAGCCCACAAAAAAGAAACGTAGAGCCAAGAAAGAGAAGGGTGCGAAAAATGGGGATGAATCTAATGTGCCTACCAATGGCAAATATGAGAAGAATATAAATGGTAATGGAAATGGCGATTCTTATGCACAAGAGTCTAGTTCCCAACATTTCGAGGAAAATGAGGATAATGGTGGTAAAGAGAATGAGCAGGTGGGTAGAGATAAGAAGAAGATTTCAAATCAACCAGTTGATAAAAAAGGAACTTCAAAGAACGCAAAATCCAAAGCAAAACTATCAACCAGAGGAAGAAAACCAAATAAAAATCTTGGCCATTTTTGCGCAACATGTGAGGAGGAGTTTGAGTCAAGGAATAAGTTACATAAGCATCTGAGCGACTCTGGGCATGCAGCAATGAAAAGTCGATAA 1905 0.4346 MASAKRCHYEVLGISRDCSPEELRSAYRKLALQRHPDKLVKSGLSQSEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSSSNSVVPDLFSFFSNTVYTGYSDSGKGFYKVYSDVFDKIQANEINFAKKLGIGVDSVRQAPLMGNLDSPYAQVTAFYSYWLGFSTVMDFCWADEYDAMAGPNRKSRRLMEEENMKVRRKAKREYNDTVRKLADFVKKRDKRVIDMKVKKNLEMEKKKEEEKERKRKLEMERKERAMAYEEPDWAKVDEEEVEDLYEDDEFEKKDEKEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFKDSLDDDEEELDGEVDEEGEIEREGEERLESEEDGVGVDDLEERIRDSLNVAEEGSADGVELNDDGDNDEFFDADHEKDGEENVVNDDVDDDENGVLETMVGGHKGRFDFDENDGSDDDDDDEIGVLEAMLAGHKSRKPSASTHEPEASVTPTQIESENENDNDGVGAMEYNNRKPTKKKRRAKKEKGAKNGDESNVPTNGKYEKNINGNGNGDSYAQESSSQHFEENEDNGGKENEQVGRDKKKISNQPVDKKGTSKNAKSKAKLSTRGRKPNKNLGHFCATCEEEFESRNKLHKHLSDSGHAAMKSR* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4321 634 Pfam Zinc-finger double-stranded RNA-binding 294 319 IPR022755 -
Mal5g4321 634 SMART dnaj_3 6 68 IPR001623 -
Mal5g4321 634 ProSitePatterns Zinc finger C2H2 type domain signature. 296 318 IPR013087 -
Mal5g4321 634 SMART ZnF_U1_5 291 325 IPR003604 GO:0003676|GO:0008270
Mal5g4321 634 PRINTS DnaJ domain signature 9 27 IPR001623 -
Mal5g4321 634 PRINTS DnaJ domain signature 27 42 IPR001623 -
Mal5g4321 634 PRINTS DnaJ domain signature 48 68 IPR001623 -
Mal5g4321 634 SMART c2h2final6 604 628 IPR013087 -
Mal5g4321 634 SMART c2h2final6 294 318 IPR013087 -
Mal5g4321 634 MobiDBLite consensus disorder prediction 306 326 - -
Mal5g4321 634 Gene3D Classic Zinc Finger 283 339 - -
Mal5g4321 634 Pfam DnaJ domain 8 73 IPR001623 -
Mal5g4321 634 SUPERFAMILY Chaperone J-domain 4 103 IPR036869 -
Mal5g4321 634 MobiDBLite consensus disorder prediction 607 634 - -
Mal5g4321 634 CDD DnaJ 7 65 IPR001623 -
Mal5g4321 634 ProSitePatterns Zinc finger C2H2 type domain signature. 606 628 IPR013087 -
Mal5g4321 634 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 438 634 IPR044648 -
Mal5g4321 634 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 1 432 IPR044648 -
Mal5g4321 634 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Mal5g4321 634 ProSiteProfiles Zinc finger C2H2 type domain profile. 604 633 IPR013087 -
Mal5g4321 634 Coils Coil 315 335 - -
Mal5g4321 634 MobiDBLite consensus disorder prediction 548 584 - -
Mal5g4321 634 MobiDBLite consensus disorder prediction 327 363 - -
Mal5g4321 634 SUPERFAMILY beta-beta-alpha zinc fingers 284 335 IPR036236 -
Mal5g4321 634 MobiDBLite consensus disorder prediction 518 547 - -
Mal5g4321 634 MobiDBLite consensus disorder prediction 468 486 - -
Mal5g4321 634 ProSiteProfiles Zinc finger C2H2 type domain profile. 294 323 IPR013087 -
Mal5g4321 634 MobiDBLite consensus disorder prediction 383 401 - -
Mal5g4321 634 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Mal5g4321 634 MobiDBLite consensus disorder prediction 306 634 - -
Mal5g4321 634 Coils Coil 229 259 - -
Mal5g4321 634 Gene3D DnaJ domain 1 91 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4321 Mal-Chr5 114423549 114425944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4321 3 634 C2H2 Transcription Factor Family AT1G74250 49.779 7.37e-180 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal5g4321 DnaJ 1.8e-21 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4321 K09506 - gmx:100788305 744.962