Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal5g4308 | ATGGAAGAAGATCAAATTCAAGAATTCAAACATGCTTGCAAGTTCTGTAACAAAAGCTTCCCTTGTGGTAGATCTTTAGGAGGTCACATGAGGTCTCATATCAACAACTTATCAGCTGAAAAAACAGAACAGAAACAAAAGCTTTCAATCAAAATCAACAATGGAAGTTGCATTGGTTCTGAAGCTGCAACTAATGGTAGCTATGGTTTAAGAGAGAATCCAAAGAAGACATGGAGGAAGAGAGTTGCAGATTCAAGTGAAGATAGTTATGTGTATGACAAATTCTGCAAAGAGTGTGGAAAAAGTTTTCACTCTTGGCAAGCTTTGTTTGGTCACATGAAGTGTCATTCAGAGAAAGAAAGAGTTTCTAACAGCTTGGAGGATCAAGATTCATGGACTAATAATGCTAAAGATGTTCAATCAGACAATGAAATCACTGCTCCAAATAAGAAGAAAAGATCAAAGAGAACAAGAATAAGGTGTAATATGGAAGCTGCTGCAACTGTAACAGCTTCTTCTTCTGTTTCTGAGGTTGGACATGAGCAAGAAGAAGTTGCTATGAGCTTGATCATGCTTAGTAGAGATGTTAGTCCTTGGAGTGGTCTTCATTCTCTTGCTGCTGAATCATCTGATAATAATTCTGTTTACTTTGAAGCTCGATCTTCGGTTCGAACTAATCTTGTTACTAAATTTGATGCTGATATTGCAAAGTTGATGAAGCAAAGTGAGAAAAAGAAGTATGAGTTAAGCAATTCTGTTTCCAAGAAGTTCAACTTCAAAGGGAAAAGTTCAGAGCTTTTGGATACTGAAAAAGGATTCAGGATGATCAAAACTGGAGTTTCTATCAAAGGGTTTCTCAAATCCACAAAATCTGAGCTTGATTATGTGTCTACATTGGAAGATTCTGAAGTTGAAAATGGGAAAAGCAGAGTCAATGGAACAGAATCAGCTATATCAAAGTCAGCTACTATTAAGAGTTCTGTGAACAAGCCTCATCATCATCTTGAAGATGAATTCATTAAGAATTTTAGTAAGAGAGGAAAGTTTGAGTGTGCTACTTGTAACAAAATCTTCCATTCTTATCAAGCTCTTGGTGGTCATAGAGCAAGTCATAAAAAGAATAAAGGGTGTTTTGCTTCTAAGATTGAGAGCAGTGAAAACAGCATTGAATTTGAAACTGATCTCTCTCATGATCATGAACCAGCAACTGAAAGCAAGCTCATGAAGATAAGTGAGAACAACATTGAATACGTTCAAAATATTGCAGAAACAGTTAGAGATTCTAAGAAGAAGATCAAAGGGCATCATGAGTGTCCAATTTGCTTTAAGGTTTTTCAATCTGGTCAAGCATTAGGTGGCCATAAAAGATCTCATATGGTTGTTGCTGGTTCTGAGAGTAGAGTTGTACTTGAGGAACAAGTTCCACAGATTAGGGACTTTCTTGATCTTAATCTTCCTGCTGCCACTGAGGAAGAAAGTAATAGTCATGCTGATTCTAACAGACCTTGGTGGATACTTGAAGGCAACCATAACCAAGAGGCACTTGTAGGGTAG | 1554 | 0.3707 | MEEDQIQEFKHACKFCNKSFPCGRSLGGHMRSHINNLSAEKTEQKQKLSIKINNGSCIGSEAATNGSYGLRENPKKTWRKRVADSSEDSYVYDKFCKECGKSFHSWQALFGHMKCHSEKERVSNSLEDQDSWTNNAKDVQSDNEITAPNKKKRSKRTRIRCNMEAAATVTASSSVSEVGHEQEEVAMSLIMLSRDVSPWSGLHSLAAESSDNNSVYFEARSSVRTNLVTKFDADIAKLMKQSEKKKYELSNSVSKKFNFKGKSSELLDTEKGFRMIKTGVSIKGFLKSTKSELDYVSTLEDSEVENGKSRVNGTESAISKSATIKSSVNKPHHHLEDEFIKNFSKRGKFECATCNKIFHSYQALGGHRASHKKNKGCFASKIESSENSIEFETDLSHDHEPATESKLMKISENNIEYVQNIAETVRDSKKKIKGHHECPICFKVFQSGQALGGHKRSHMVVAGSESRVVLEEQVPQIRDFLDLNLPAATEEESNSHADSNRPWWILEGNHNQEALVG* | 518 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal5g4308 | 517 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 13 | 33 | IPR013087 | - | |
| Mal5g4308 | 517 | Gene3D | Classic Zinc Finger | 8 | 116 | - | - | |
| Mal5g4308 | 517 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 351 | 371 | IPR013087 | - | |
| Mal5g4308 | 517 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 436 | 458 | IPR013087 | - | |
| Mal5g4308 | 517 | SMART | c2h2final6 | 94 | 116 | IPR013087 | - | |
| Mal5g4308 | 517 | SMART | c2h2final6 | 349 | 371 | IPR013087 | - | |
| Mal5g4308 | 517 | SMART | c2h2final6 | 436 | 458 | IPR013087 | - | |
| Mal5g4308 | 517 | SMART | c2h2final6 | 11 | 33 | IPR013087 | - | |
| Mal5g4308 | 517 | Pfam | C2H2-type zinc finger | 11 | 33 | - | - | |
| Mal5g4308 | 517 | Pfam | C2H2-type zinc finger | 435 | 459 | - | - | |
| Mal5g4308 | 517 | Pfam | C2H2-type zinc finger | 349 | 373 | - | - | |
| Mal5g4308 | 517 | Pfam | C2H2-type zinc finger | 96 | 118 | - | - | |
| Mal5g4308 | 517 | Gene3D | Classic Zinc Finger | 346 | 458 | - | - | |
| Mal5g4308 | 517 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 94 | 121 | IPR013087 | - | |
| Mal5g4308 | 517 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 11 | 38 | IPR013087 | - | |
| Mal5g4308 | 517 | SUPERFAMILY | beta-beta-alpha zinc fingers | 95 | 371 | IPR036236 | - | |
| Mal5g4308 | 517 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 349 | 376 | IPR013087 | - | |
| Mal5g4308 | 517 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 438 | 458 | IPR013087 | - | |
| Mal5g4308 | 517 | MobiDBLite | consensus disorder prediction | 306 | 329 | - | - | |
| Mal5g4308 | 517 | SUPERFAMILY | beta-beta-alpha zinc fingers | 8 | 36 | IPR036236 | - | |
| Mal5g4308 | 517 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 1 | 517 | - | - | |
| Mal5g4308 | 517 | MobiDBLite | consensus disorder prediction | 309 | 328 | - | - | |
| Mal5g4308 | 517 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 96 | 116 | IPR013087 | - | |
| Mal5g4308 | 517 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 517 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal5g4308 | Mal-Chr5 | 114165369 | 114166922 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal5g4308 | 346 | 495 | C2H2 Transcription Factor Family | AT2G45120 | 44.872 | 4.41e-29 | 115 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Mal5g4308 | zf-C2H2_6 | 5e-11 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal5g4308 | - | - | gmx:102666705 | 608.986 |