Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4270 ATGGAAACTAGTGGACGAAACGAAACACCCTTCTTGGGTTTTCGTTTTGTCTCCAAATTTCTATTATGTGCCATTTCTGGAACTCTCACTGCATGTTTTGCCTTTGCTGGGGCCCTCACAGGAGCTATAGCTGGTGCTTTAGCAGCTAAGGCTACCAAGAGTGGTTTTCTACGGGGAGTTTCATTTGGTGCCATTGCCGGGGCTATACTCTCGGTGGAGGTGTTGGAAGCTTCCCGTGCTTATTGGTGTATGGAACGAACTGGTTCTCGCGGCGCGTCATCTATGGCAGATTTCATAGAGGAACTTGTTCGTGGAAGGCTTGTAGAAGAATCACTTACACCTGCTATTTTAACTGGTTACAATTTGCAATTTGAGCAGGTTGGAATTGCTAATAACACTGGCTATGATGAGATTCATGATGTTCATAGCTTAGTATCATCCAGAGGATTGTCAGGTGATTCATTGAATAAGCTACCGCACCATATGGTCTTGAAGGACATGAAGGCAGAGGATACTTTCTGTGCAATATGTTTGCAGGACATTGAAGTAGGAGAAGTTGCAAGAAGCTTACCTCGTTGCGACCATACATTTCACTTGATATGCGTGGACAAATGGCTTGTCAAGAATGATTCGTGTCCTATTTGCAGACAGAATGTGTAA 660 0.4409 METSGRNETPFLGFRFVSKFLLCAISGTLTACFAFAGALTGAIAGALAAKATKSGFLRGVSFGAIAGAILSVEVLEASRAYWCMERTGSRGASSMADFIEELVRGRLVEESLTPAILTGYNLQFEQVGIANNTGYDEIHDVHSLVSSRGLSGDSLNKLPHHMVLKDMKAEDTFCAICLQDIEVGEVARSLPRCDHTFHLICVDKWLVKNDSCPICRQNV* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4270 219 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 12 218 IPR044523 -
Mal5g4270 219 SUPERFAMILY RING/U-box 155 219 - -
Mal5g4270 219 SMART ring_2 174 215 IPR001841 -
Mal5g4270 219 Pfam Ring finger domain 174 216 IPR001841 -
Mal5g4270 219 ProSiteProfiles Zinc finger RING-type profile. 174 216 IPR001841 -
Mal5g4270 219 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 12 218 - -
Mal5g4270 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 219 IPR013083 -
Mal5g4270 219 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4270 Mal-Chr5 113813239 113815900 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4270 17 219 C3H Transcription Factor Family AT1G74410 55.392 1.47e-73 220
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4270 5 113813239 113815900 Mal5g4270 5 113813239 113815900 ECH