Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4262 ATGGAAAACCTTTCAGTCTTATCAAGTAAGGAAGATGAGAAGATGGATTTACCTCCTGGATTTCGATTTCATCCATCTGATGAAGAGCTTATAAGTCATTATCTTTACAAAAAGGTTATTGATTCAAATTTCTCTGCAAGAGCCATTGGTGATGTAGACCTCAACAAGTCTGAACCTTGGGATTTACCATGGAAAGCAAAAATGGGAGAAAAAGAATGGTACTTTTTCTGTGTGAGAGACAGAAAATACCCAACAGGGTTGAGGACAAACAGAGCAACAGAAGCAGGGTATTGGAAAGCTACTGGGAAAGATAAAGAGATTTTCAAAGGAAAATCTTTGGTTGGAATGAAGAAAACTCTTGTGTTTTACAAAGGAAGAGCACCTAAAGGAGAAAAAAGTAATTGGGTCATGCATGAATATCGACTTGAGGGTAAATTCTCTGTTCACAATCTTCCAAAAGCTGCAAAGAATGAATGGGTTATTTGTAGGGTTTTTCAGAAGAGCTCAGCTGGGAAAAAGACACATATTTCTGGTATAATGAGGTTGGATTCACTTGGTAACGGATTTGGTTGTTCTGTTTTACCAGCACTTACTGATTCATCGAATTCGATTGGGAAAATCAAACAATTGAATGATTCAGCTTACGTGCCCTGCTTCTCCAATTCAATTGATGTTCAAAGAAACCAAGGAGGGATCTTTGATTCATTCAACAACTCAATTTACGGTGTTTCTTCGAATAATAATCAACTAGATTTTTTTCCAAGAATTTCATCTTCTAATGGTTCGTTATACTCTAATAATCAAGCTGCGGGTAATTTTCAATTTCCTGGTTCTGTTTGTGGTATGCAAGATCAATCAATTTTAAGAGCTTTGTATGAAAACAATGGTTTCAAGACTGAGAGACAGCAACAAATTATGAGTGTTTCACAGGAAACGGATCTAACTACTGATATGAATGCTGAAACATGTTCTGTTGTGTCAAATTTTGATATTGGTAGAAGAGCTTTTGAGAATAATCAGAATCGTCCACCACCTGCTTCTGTTGCAGCTGTTGATTTTGATGGTACTTTGTGGAATTACTAA 1083 0.3638 MENLSVLSSKEDEKMDLPPGFRFHPSDEELISHYLYKKVIDSNFSARAIGDVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSVHNLPKAAKNEWVICRVFQKSSAGKKTHISGIMRLDSLGNGFGCSVLPALTDSSNSIGKIKQLNDSAYVPCFSNSIDVQRNQGGIFDSFNNSIYGVSSNNNQLDFFPRISSSNGSLYSNNQAAGNFQFPGSVCGMQDQSILRALYENNGFKTERQQQIMSVSQETDLTTDMNAETCSVVSNFDIGRRAFENNQNRPPPASVAAVDFDGTLWNY* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4262 360 SUPERFAMILY NAC domain 13 167 IPR036093 GO:0003677|GO:0006355
Mal5g4262 360 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
Mal5g4262 360 Gene3D NAC domain 26 171 IPR036093 GO:0003677|GO:0006355
Mal5g4262 360 ProSiteProfiles NAC domain profile. 17 167 IPR003441 GO:0003677|GO:0006355
Mal5g4262 360 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 6 356 - -
Mal5g4262 360 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4262 Mal-Chr5 113648706 113649999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4262 15 360 NAC Transcription Factor Family AT5G07680 57.637 1.63e-128 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mal5g4262 NAM 5.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4262 - - cam:101502392 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4262 5 113648706 113649999 Mal2g4256 2 79704365 79705946 ECH
Mal5g4262 5 113648706 113649999 Mal5g4262 5 113648706 113649999 ECH