Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4261 ATGGGGAGAGTTAAACTGAAGATAAAGAAATTGGAAAACACAAGCAATCGACATGTGACTTATTCAAAGCGAAAAAGTGGAATCTTAAAGAAAGCAAAGGAGTTATCAATTCTATGTGATGTAGATATTCTCCTTCTCATGTTTTCTCCAACGGGAAAGCCTACCTTGTTGCAGGGAGAGCGAAGCAATATGGAGGAGATCATTGCAAAATTTGCACAACTTAGCCCACAAGAAAGGGCCAAAAGGAAGATGGAAAGTCTTGAAGCGCTGAAGAAAACCTTTAAGAAATTGGATCATGATGTAAAAATACAAGATTTCTTGGGTTCAAGCAGTCAAACTGTGGAGGAACTAAGTCATCAAGTGAGAGTCTTACAAGCTCAGCTCGCAGAAATACAACAGAGACTGAGTTATTGGAGTAACCTGGAGAAGATCAATAATTTGGAACATCTTAGACAAATGGAAGACTCACTCAGGGAATCAATCAATCGATTGTGTATACAAAAGGAAAATCTCGGAAAACGCCAACTAATGTCACTTGAATGTGCTAATCAGTTACCAGAAGGGATGACTATACCTTTAATGATGGCTGGTCTACAAGAATCTCAACCCTTGTCCTGGCTTCTAAGTGGTGATAATCACCAGTTGATGTTACCTAGTGAGCCAAAATTTATGTCATTTAGTGATAATGGCAATAGAGATGTTGAGTGCTCCACCGATATTTCACTCCCTGGTTATTCTGGTTATGCTGGGAATTGTAAACTTGAGGTTGGAAACTCTCCACATGTCACTACTTTGGGTCAAGGATGTGGTACCTTGACTGAGTTAAATGGAAATCCAAATCCTTACTTAAATATGCAACAGTCTGAGCAGTTTACGTACCCTCCTCCGCAAGATCTTGAGGAAGTTAAACATCACCAAACAATGAATAGCAAGTCAAATAATATGGATTACCAAATTAATAACAATTTTGAACTTCCAAGATCACTGTTTGAAAATGGACATCAGTTTTGGAACTCTACAAATGGCTCTTGTGGTATTGCTATGTATAATGAGAATGGTTATCATAGGTAA 1071 0.3828 MGRVKLKIKKLENTSNRHVTYSKRKSGILKKAKELSILCDVDILLLMFSPTGKPTLLQGERSNMEEIIAKFAQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTVEELSHQVRVLQAQLAEIQQRLSYWSNLEKINNLEHLRQMEDSLRESINRLCIQKENLGKRQLMSLECANQLPEGMTIPLMMAGLQESQPLSWLLSGDNHQLMLPSEPKFMSFSDNGNRDVECSTDISLPGYSGYAGNCKLEVGNSPHVTTLGQGCGTLTELNGNPNPYLNMQQSEQFTYPPPQDLEEVKHHQTMNSKSNNMDYQINNNFELPRSLFENGHQFWNSTNGSCGIAMYNENGYHR* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4261 356 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 1 355 - -
Mal5g4261 356 Coils Coil 77 97 - -
Mal5g4261 356 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Mal5g4261 356 Coils Coil 114 134 - -
Mal5g4261 356 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal5g4261 356 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal5g4261 356 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal5g4261 356 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal5g4261 356 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Mal5g4261 356 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Mal5g4261 356 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 355 - -
Mal5g4261 356 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal5g4261 356 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4261 Mal-Chr5 113624223 113627458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4261 1 276 Type I MADS-box Gene Family AT2G03060 51.579 1.19e-89 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal5g4261 SRF-TF 1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4261 - - pvu:PHAVU_003G189100g 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4261 5 113624223 113627458 Mal5g4261 5 113624223 113627458 ECH