Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4253 ATGTTGACAATGCTGACTAAGCCACATACTAGTATGGGTTGGAGCTATAATTTTCATGACAAAGATGAAAAGCCATTTACGTGCAACCAAGTTTCTTACAGTGGAAACAGTAGTGAGTATCTGCCCAAGGACGAATTTTGGGATTTTTTTTCTCTTATGGAATGTGATTGCCCTCATCATCTTTTATACGAATCTCTCTCCATTGAACCAAGTGAACCAATTCCAAGTCTCAAAGATTACGATGATTTTTATGATTTGAAGAATGTATTTGATGGATGGATCGAAATAATCGATGAAAAGAAGGAGGTTGTGGAAGTTAAGCAAGAAGGAAACGATCGAAATACAAAGCATTTATCAAAGAAGGCCATATCTCAGTATTTTTATATGCCAATAACACAAGCAGCAAGAGAACTCAATGTAGGCCTCACACATTTGAAAAAAAGATGTAGAGAATTGGGTATTCGTAGGTGGCCCCACAGAAAACTCATGAGCCTACAAACCTTAATCAATAATATTCAGGAGTTAGGGAAAGAGGAGGGTCCACTTAGTGATGAAAAGTTGAGGGATATTGAGAAATTGGAAAAGGAAAAGAAGCAAGTGGAGGAGATGCCAGATATAGAATTGGAAGTTCATACAAAAAGGCTTAGACAACATTGTTTTAAGGCCAATTACAAGAAGAGAAAGCTTATTGATCAGCAGATGTTTTAA 708 0.3672 MLTMLTKPHTSMGWSYNFHDKDEKPFTCNQVSYSGNSSEYLPKDEFWDFFSLMECDCPHHLLYESLSIEPSEPIPSLKDYDDFYDLKNVFDGWIEIIDEKKEVVEVKQEGNDRNTKHLSKKAISQYFYMPITQAARELNVGLTHLKKRCRELGIRRWPHRKLMSLQTLINNIQELGKEEGPLSDEKLRDIEKLEKEKKQVEEMPDIELEVHTKRLRQHCFKANYKKRKLIDQQMF* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4253 235 ProSiteProfiles RWP-RK domain profile. 101 186 IPR003035 -
Mal5g4253 235 PANTHER PROTEIN RKD1-RELATED 100 233 - -
Mal5g4253 235 PANTHER PROTEIN RKD4 100 233 IPR044607 GO:0003700
Mal5g4253 235 Coils Coil 183 203 - -
Mal5g4253 235 Pfam RWP-RK domain 118 165 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4253 Mal-Chr5 113503364 113504402 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4253 115 228 AtRKD Transcription Factor Family AT1G18790 68.696 6.06e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Mal5g4253 RWP-RK 1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4253 - - cam:101509125 211.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4253 5 113503364 113504402 Mal5g4253 5 113503364 113504402 ECH