Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4251 ATGAAAAAGCGGCAAGTGGTGGTGGTGGTGAAAAGCAACACTTCTTCATCTTCAAGAAATATTGTTCGATATGGAGAGTGTCAAAAGAATCACGTAGCTTATAGTGGAGGCTATGCTGTTGATGGATGCATGGAGTTCATGGCAAGCTCAGAAGAAGAAGCACTTAAATGTGCTGCTTGCGGTTGTCATAGGAACTTCCACAAAAGAAAAATATTGCAAAGTACAGACTGA 231 0.4113 MKKRQVVVVVKSNTSSSSRNIVRYGECQKNHVAYSGGYAVDGCMEFMASSEEEALKCAACGCHRNFHKRKILQSTD* 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4251 76 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 24 70 IPR006456 -
Mal5g4251 76 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 23 70 IPR006456 -
Mal5g4251 76 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 70 - -
Mal5g4251 76 Pfam ZF-HD protein dimerisation region 22 70 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4251 Mal-Chr5 113486768 113486998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4251 1 71 Zinc finger-homeobox gene family AT1G18835 60.274 5.02e-26 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mal5g4251 ZF-HD_dimer 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4251 - - ccaj:109806860 101.679