Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4249 ATGATGGGAAGGCCACCATGTTGTGAGAAAATAGGTATTAAGAAAGGACCTTGGACTCCTGAAGAAGATATCATCTTAGTTTCTTACATTCAACAACATGGACCTGGGAATTGGAGATCTGTTCCCACCAATACCGGTTTGATGAGATGTAGTAAGAGCTGCAGACTTAGATGGACAAACTATCTTCGACCGGGTATCAAACGAGGTAACTTCACAGATCATGAAGAGAAAATGATTGTTCATCTCCAAGCTCTTCTTGGCAACAGATGGGCTGCTATAGCTTCATATCTTCCACAAAGGACAGACAATGATATCAAAAATTATTGGAATACACATTTAAAGAGGAAGATGAACAAAGATCAAAGTAATACTGATGATGGTGTTGATCAAGATTCACGTTCACAGTTGCCGAATAAGGGACAATGGGAAAGAAGGCTACAAACAGATATTCATATGGCCAAACAAGCCTTATCTGAGGCTTTGTCCCTTCAACATAATCCAACAACTCTTACTACTTTGCCTGATCAGATGAAACCCTCATCAAGTTTTTCTCATTCTCATGAACATCCACCAAACCTGAATATTCCATCTCCATATGCATCAAGCTTTGAAAACATTTCTAGATTGATGGAAAATTGGATGAAATCACCTAACTCTTCAGCTGAAACAAATTCCTCATCAATATTCAGCAACACGCAAGGATCAAGTTCTAGTGAAGGAGCACAAAGCACAATTACACAAGATCATCATCATGGCCTTAACTCATCCAAATATGATTATGCATCTCGATTTAGGTCAACTCATGAAGGGAACAACAACTTCAACTTGAACACAAAAGAGGGTCTCTTCTTCCACCAAGAGGAAAGGATTAATATTAAAGCAAACATGGAAACGCATGTTCCTCTTACTTTGCTTGAAAAATGGCTTTTTGAAGATGGGGGAGCAACTCATGAGTGCCATGAAGAAGATCTTATAAACATGTCAATTGAGGAAACTACTTCAGATTTCTTTTAG 1014 0.3846 MMGRPPCCEKIGIKKGPWTPEEDIILVSYIQQHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIVHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKRKMNKDQSNTDDGVDQDSRSQLPNKGQWERRLQTDIHMAKQALSEALSLQHNPTTLTTLPDQMKPSSSFSHSHEHPPNLNIPSPYASSFENISRLMENWMKSPNSSAETNSSSIFSNTQGSSSSEGAQSTITQDHHHGLNSSKYDYASRFRSTHEGNNNFNLNTKEGLFFHQEERINIKANMETHVPLTLLEKWLFEDGGATHECHEEDLINMSIEETTSDFF* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4249 337 MobiDBLite consensus disorder prediction 216 251 - -
Mal5g4249 337 MobiDBLite consensus disorder prediction 169 198 - -
Mal5g4249 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Mal5g4249 337 Gene3D - 14 67 - -
Mal5g4249 337 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Mal5g4249 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 325 - -
Mal5g4249 337 MobiDBLite consensus disorder prediction 216 253 - -
Mal5g4249 337 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Mal5g4249 337 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 2 325 - -
Mal5g4249 337 Gene3D - 70 146 - -
Mal5g4249 337 SMART sant 67 115 IPR001005 -
Mal5g4249 337 SMART sant 14 64 IPR001005 -
Mal5g4249 337 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mal5g4249 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Mal5g4249 337 CDD SANT 70 113 IPR001005 -
Mal5g4249 337 MobiDBLite consensus disorder prediction 116 141 - -
Mal5g4249 337 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Mal5g4249 337 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Mal5g4249 337 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4249 Mal-Chr5 113449576 113450900 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4249 2 312 MYB Transcription Factor Family AT5G62470 52.000 1.88e-103 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal5g4249 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4249 K09422 - pvy:116114586 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4249 5 113449576 113450900 Mal5g4249 5 113449576 113450900 ECH