Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4216 ATGGAAGCTAACAAGCTTAGATTGCTCTTTTTGTGTGTATTTTATCTTGCTATATTCCCTACCTTCAAGGCTAACATAGTTCATTTCGACCAATTCTGGCAGAGACGATCTCATGATGCCAAAAAGGCTGCACAACAAGCTTACAAGCCAAACCCTCAAGAAATAACTTCTCATTTCAATAAGCATGTCCACAAGGCTCTTGATGGTTCCAATAGTACGAGGCGGGGTTTAGCCAAATACAAAGGTCCATGCTCAGCCACAAATCCCATCGATAGTTGCTGGAGATGTGATCCAAATTGGGAAAAGAACCGCAAGAAGCTAGCAGATTGTGTACTTGGTTTTGGTCACGGCACAACAGGAGGCAAAGCTGGCAAAATTTATGTCGTCAATGATCCATCTGACAATGATCTTGTCAACCCAAAACCAGGGACATTGCGACATGCAGTCATTCAGAACGAGCCATTATGGATCATTTTTAAACATAACATGAATATCAAACTAAAGGCAGAGCTTCTATTGACCGATAACAAGACCATAGATGCACGTGGTGCAAACGTTCATATTAGTGAGGGTGCTCAAATAACGTTGCAATATGTGAAAAACATTATCATTCATGGATTACATATCCATGATATTAAAAAAAGTGGTGGTGGCCTCATCAGAGACTCGATGAACCACTTTGGAACCCGTAGTATGAGTGATGGTGATGGAATTTCAATGTTTGGAGTTAGTCATGTTTGGATAGATCATCTTTCAATGTGGAATTGTGATGATGGATTGATTGATGCCGTAGCGGGATCAACGGCTATTACCATTTCCAATTGCCATATGACACGTCATAACGATGTTATGTTATTTGGAGCAAGTGATGGATTCTCAGGAGATCAAATCTCGCAAATAACTGTGGCTTTCAACCATTTTGGGAAAGGATTAATACAGAGGATGCCAAGGTGCAGATGGGGATTCTTTCATATTGTTAACAATGACTACACTCATTGGCTTATGTATGCCATTGGTGGTAGCACACATCCCACCATACTCAGCCAGGGTAACCGGTTTATTGCTCCTCCAAACCCAAATGCAAAAGAGGTGACAAAGAGGGATTATGCACCTGAAAGTGTATGGAAGGCATGGAGTTGGAGATCAGAGAATGACTTGATGATGAATGGAGCATTCTTTACTCAGTCTGGAAGTAAGGCTGCAAATTTTCCCAAGACAGACATCAAGGCAAAGCCCGGGAGTTTTGCAGCAGCTCTTACTAAATTTGCAGGTTGTCTAAAATGTGAAGTAAACAAGCCATGTTGA 1305 0.4138 MEANKLRLLFLCVFYLAIFPTFKANIVHFDQFWQRRSHDAKKAAQQAYKPNPQEITSHFNKHVHKALDGSNSTRRGLAKYKGPCSATNPIDSCWRCDPNWEKNRKKLADCVLGFGHGTTGGKAGKIYVVNDPSDNDLVNPKPGTLRHAVIQNEPLWIIFKHNMNIKLKAELLLTDNKTIDARGANVHISEGAQITLQYVKNIIIHGLHIHDIKKSGGGLIRDSMNHFGTRSMSDGDGISMFGVSHVWIDHLSMWNCDDGLIDAVAGSTAITISNCHMTRHNDVMLFGASDGFSGDQISQITVAFNHFGKGLIQRMPRCRWGFFHIVNNDYTHWLMYAIGGSTHPTILSQGNRFIAPPNPNAKEVTKRDYAPESVWKAWSWRSENDLMMNGAFFTQSGSKAANFPKTDIKAKPGSFAAALTKFAGCLKCEVNKPC* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4216 434 PANTHER PECTATE LYASE 18-RELATED 7 434 IPR045032 GO:0030570
Mal5g4216 434 Pfam Pectate lyase, N terminus 25 77 IPR007524 GO:0030570
Mal5g4216 434 SMART amb_all 162 359 IPR002022 -
Mal5g4216 434 SUPERFAMILY Pectin lyase-like 88 424 IPR011050 -
Mal5g4216 434 PANTHER PECTATE LYASE 7 434 - -
Mal5g4216 434 Gene3D - 87 427 IPR012334 -
Mal5g4216 434 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Mal5g4216 434 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Mal5g4216 434 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Mal5g4216 434 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Mal5g4216 434 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Mal5g4216 434 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Mal5g4216 434 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Mal5g4216 434 Pfam Pectate lyase 173 353 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4216 Mal-Chr5 113015616 113017522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4216 1 434 Polysaccharide Lyase AT3G01270 55.368 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4216 K01728 - gmx:100801864 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g0112 3 4169621 4172294 Mal5g4216 5 113015616 113017522 ECH
Mal6g3792 6 110564893 110567294 Mal5g4216 5 113015616 113017522 ECH
Mal5g4216 5 113015616 113017522 Mal5g4216 5 113015616 113017522 ECH