Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4199 ATGTCAAATATGAATATTTTGTTTCAGAATCAACAACAAACTCCTCGTGGAAATTCTTCTCAACAACCTCTTGATTCTCTTTTCCTTTCTTCTTCTTCTGTTCCTTTCTTTGGTTCAAGATCTATGGTGAGTTTTGAAGATGTTCAAGGAGGGAAAAGGTGCAATAGGTCTTTCTTCGGTGGATTTGATCTCGATGAAAACGGAGAAGATGAAATGGATGAGTACTTTCATCAATCGGAGAAGAAGCGGCGTCTTTCAGTGGATCAAGTTCAGTTTCTTGAGAAAAGCTTTGAAGTTGAGAACAAGCTTGAACCAGAGAGGAAAACCAAGTTAGCCAAAGAACTTGGTTTGCAGCCACGGCAAGTTGCTATTTGGTTTCAGAACCGTCGTGCAAGGTGGAAGACCAAACAGCTTGAGAAGGATTATGATTCTCTTAATGATAGTTTTGAGTCTCTTAAGACTGATTATGACAATCTTCTCAAGGAGAAAGATAGGTTACAAGCTGAGGTGGCAAGCCTAACTGAAAAGGTACTTGCAAGAGAGAGTCAAGAGGGGAAATTCAAACAAGGTGAAAGTGAAACAAAGGGATTATTGCAAGAACCACAAATGAAAAAACCTTTGATTGATTCAGTTTCTGAGGGTGAAGAATCCAAATTGTCAATTGTTGAAGCTTGTAATAATAATAATAATAGTAACAAACTTGAAGATATAAGTTCAGCAAGGAGTGACATATTGGATTGTGACAGCCCACGTTACAAGGATGGAGTGTTAGAGAAAAATTATTCTTCCTATGTATTTGAACATGAATATCAATCAGACCTATCACAAGATGAAGAAGACAATTTATTGCCTCCTTACATTTTTACAAAACTTGAAGATGTTAATTACTCCGACCCGTCTCATAGTTCATCAAGTTATGGATTTCAAGAGGAAGATCATCATCATCATCATCAAGCTCTTTGGTCTTGGTCTTACTAG 978 0.3732 MSNMNILFQNQQQTPRGNSSQQPLDSLFLSSSSVPFFGSRSMVSFEDVQGGKRCNRSFFGGFDLDENGEDEMDEYFHQSEKKRRLSVDQVQFLEKSFEVENKLEPERKTKLAKELGLQPRQVAIWFQNRRARWKTKQLEKDYDSLNDSFESLKTDYDNLLKEKDRLQAEVASLTEKVLARESQEGKFKQGESETKGLLQEPQMKKPLIDSVSEGEESKLSIVEACNNNNNSNKLEDISSARSDILDCDSPRYKDGVLEKNYSSYVFEHEYQSDLSQDEEDNLLPPYIFTKLEDVNYSDPSHSSSSYGFQEEDHHHHHQALWSWSY* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4199 325 Coils Coil 135 183 - -
Mal5g4199 325 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 4 322 IPR045224 GO:0003700
Mal5g4199 325 SUPERFAMILY Homeodomain-like 69 138 IPR009057 -
Mal5g4199 325 Pfam Homeobox associated leucine zipper 136 177 IPR003106 GO:0006355|GO:0043565
Mal5g4199 325 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Mal5g4199 325 SMART HOX_1 79 140 IPR001356 GO:0003677
Mal5g4199 325 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Mal5g4199 325 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Mal5g4199 325 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Mal5g4199 325 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Mal5g4199 325 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 4 322 - -
Mal5g4199 325 MobiDBLite consensus disorder prediction 183 211 - -
Mal5g4199 325 Gene3D - 84 130 - -
Mal5g4199 325 CDD homeodomain 81 137 IPR001356 GO:0003677
Mal5g4199 325 Gene3D - 131 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4199 Mal-Chr5 112621085 112622587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4199 38 323 Homeobox Transcription Factor Family AT3G01470 39.024 6.14e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mal5g4199 Homeodomain 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4199 - - mtr:MTR_4g107650 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4199 5 112621085 112622587 Mal5g4199 5 112621085 112622587 ECH