Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4186 ATGGGAGGAGGAGATCCTTCCTTATCGGATATGGAGGAAGAGGAGGAGGATCACGATGTGCTCGTGAACGATTCAGTTAACATTCTCTCCCGTTTTCGAATCGTTGATGCTCCTATACTCCTTTTCGTTTGTTTTCATAAAGCTCTGCGTTCTGAACTTGATCAGCTTCGTCCGTCTGCTGAAACGGCGTCGTTGGAAAATGATCCAAACCGTTGCCGAGAAATAGTTGTTAAGCTTCAACAGAGATTTCAGTTTCTTAAACTTGCTTTTAAGTATCATTGCGCTGCTGAAGATGAGATTATCTTCCATGCACTGGATACACATGTAAAAAATGTTGTATGCACATATTCCCTTGAACATAACAGCACCAATGGGCTGTTTGATTCTATCCTACACTTCTTGGATGAGCTGATGGGCTCTAGTGAGAATATTTCCAAGCTGTTCCGAGAACTTGTATACTGTATTGATATCTTGCAAACCTCCGTTTACCAACATATGCTGAAAGAAGAAGAGCAGGTTTTTCCTCTGTTGATCCAAAAATTGTCAACAAAAGAACAAGCCTCACTTGTGTGGCAATTCATATGTAGTGTTCCTATAATGTTGCTGGAGGAAGTTTTGCCATGGATGGTGTCCTTCCTTTCAGCAGATAAACAAGCAGAAATTACTCGGTGTTTTAATGAAATTGCACCAATGGAAACAGCACTGCAAGAGGTTTTGGTTTCTTGGCTTGGAAGCAACAAACAAACCTTCACTGGGACATATTTTCAGAGTGAGGAACTTCAAGGTTCTCGTGGATTCTTACATATAGAAAAACCATTTGGTCCGAGTTCATTCAATAGGAACTCCATAGAACTTTCGAGTCAGACGAAACTGAACGACAAAGAAACAGAAGATGGGGTCAACCAGGTTAAAGTTCTCCATCTTTGGCATAACGCCATCAAGAAAGATTTGAAAGAAATTCTGCAAGAGCTTTATCTACTAAGAAATTCCGGTTCCGGCTGTTCTCAAAATTTAGACTCAATACTTATCCAGCTAAAATTCTTGGCTGATGTCCTCATCTTCTACAGCAATGCTCTTAAGAAATTCTTTCATCCTGTACTGAACAAACATGCCCATGACCGATTTTCCAAGTCTACTGAACATTTCCTTGGTGAAAGTCACATTGAAGATTTACAACAGTTGCTATTATATAACTCAGAAAGTGAAATGCCTTTGACCAAATTTGTAGAAAAGCTTTGTGGAAAACTTGAATTATTTGTATCAGCAGTCAACCAACAATTTTCTTTTCAAGAAATTGAGGTGTTTCCTATCTTTAGAAAGAACTGCAGAAATGGAATGCAAGTGAGACTTCTAAGCTTGAGCATGCATATGATGCCACTTGGGTTACTAAAATGTGTTATAACTTGGTTCTCAGTTCACTTGTCTGAAAAAGAATCCAGGTCCATTCTCTATTGCATAAAGGAAGGAAATAATTCTGCCAGTAAAGCTTTTGCACCGTTGTTACATGAATGGTTCCGCATTGGTTATTCTGGTAAGACCTCAATTGAAAAGTTCCGACAGGACTTGCAGCATATGTTCAAAAGAAGACACTCTTTTTCATCTGAGAAAATGAAGGAAGCTTGTGGGTTTTCATTCTTAAGTTCTGACAAGCAGCCACATAAAAGTTGTGACAAGAATTGTTTGTCCTATTCCTCATCTTCTGGATCTAAAAATGTGAGCAAGTATGAGACACCATACTCCACAGGAATTAATTTGCACATATTTTTCCCTGACATTGCTATGAAGTTAAATCAGCATCCAAGATTTCATGCAGCGAATTCTTCTTCTGTTTCCTTTCTTAATGATCCAAAACCAATTGACCTGATATTTTTTTTTCATAAGGCTATTAAGAAAGATTTGGATTACCTAGTTCTTGGCTCAGCTCAGTTAGAGGGACATGATGAGTTGGTTATAGATTTCCAAAAACGGTTCAATCTCATATGTTTTCTTCATCAAATCCATAGTGATGCAGAGGATGAGATAGTTTTTCCAGCCTTGGAGGCAATAGGTCAGCTCAAAAACATTAGCCTTGCCTACACCTTTGATCATAAACATGAAGTTGAGCACTTCAGTAAAATGTCTCGCATTCTTGATAAGATGTCTGAATTACATCTTCCAGTTTCTACTACTGATTCGAAGATAAGGGACAAAAGAATGCTAAGGCGTCATCATTTAATCATGAAGCTGCAAGAAAGGTGCAAATCAATGCATAAGTTACTTTCTGATCATATAAACCGTGAGGAAATAGAAATTTGGCCTATAATTAGAGAATTCTTCTCGAACCGGGAGCAAGGGAAGATCATAGGATGCATACTTGGAAGAATAAGTGCAGAAATATTACAAGATATGATACCTTGGCTAATGGCATCTTTAACACAGGAAGAGCAACATGTTTTGATGTTCTTATGGTCCATGGCTACTAAGAATACAATGTTTGATGAATGGTTAAGTGAATGGTGGAATGGGTACAGTTTAGCTAAGGCAGCAGATGGATCAAATGATGCCCCTCTACAGAATCTTGAGCCACTAGAAATTATATCTAAATATTTGTCAGAAGATGTTCTTAATGCATTAGAAGAAGAATCGTTTGCCAATGAAAGCATACGTTTTTTGCAGAAGGATCTTATTGGCGATAATTTTGAGCTGTCCAACGACAATGTTAAGGTTCATAATGCAGCACAAAATTATAGTCAATGTTCAAAATGCACAAATCAATTTCATGATATTAAGAAACATGTCTGCAATGAAGTAAAACCAGTGAGCATTATGACAAGTCAGTCTGTTCAATATTTTGATTTTGACAAGTCTGGGCATTATGACCGACTTCTGAAATTAAGCCAAGATGATCTGGAGAGGGTAATAAGAAGGGTGTCTCGTGACTCTTGCCTGGACCCTCAGGAAAAGTCGTACATAATACAGAGCCTACTTACAAGCCGTTGGATCATTCGTCAGAAGATCTCTTCTATGGAAGCCAATATCAAAAGTGACGGACAGGAATTCCCTGGGAAATATCCATCTTACAAGGACCCTCTCAAACAAATGTATGGTTGCAAACACTACAAGAGAAACTGTAAGCTTTTAGCTCCCTGTTGCAACCAACTTCATGCTTGCATACATTGTCATGATGAGGTATCAGATCATTTAATTGACAGAAAATCAATTACAAAGATGATGTGTATGAAGTGCTTGGTGGTTCAACCGATCAATGCCACATGTTCATCCGTTTCTTGCCGTAATTTATCCATGGCAAAATATTACTGCAGGATCTGCAAAATATTTGAAGATGAAAGGGAAATTTACCATTGTCCCTATTGCAACTTATGCCGAGTTGGAAAGGGTTTGGGTGTTGACTATTTTCATTGCATGAATTGCAATGCTTGTATGTCACGTTCTCTTATGATACATACATGCAGAGAGAAATCATTAGAGGAAAACTGTCCAATTTGTCATGAATATATCTTCACATCCTGCTCTCCAGTAAAAGCCCTCCCATGCGGTCATGTGATGCACTCAACATGTTTTCAGGAATACACTTGCTTTAACTATACCTGCCCAATATGTAGCAAGTCACTGGGAGACATGCAGGTTTATTTTAGGATGCTAGATGCACTATTGGCCGAGGAGAAAATGTCTGACGAGTTTTCGGGTCAAACTCAGGTTATACTATGCAATGACTGTGGAAAGAAAGGAGCAGCTCCCTTCCACTGGCTTTACCATAAATGCCCTTGTTGTGGTTCCTATAACACTAGAGTTCTATGA 3798 0.3857 MGGGDPSLSDMEEEEEDHDVLVNDSVNILSRFRIVDAPILLFVCFHKALRSELDQLRPSAETASLENDPNRCREIVVKLQQRFQFLKLAFKYHCAAEDEIIFHALDTHVKNVVCTYSLEHNSTNGLFDSILHFLDELMGSSENISKLFRELVYCIDILQTSVYQHMLKEEEQVFPLLIQKLSTKEQASLVWQFICSVPIMLLEEVLPWMVSFLSADKQAEITRCFNEIAPMETALQEVLVSWLGSNKQTFTGTYFQSEELQGSRGFLHIEKPFGPSSFNRNSIELSSQTKLNDKETEDGVNQVKVLHLWHNAIKKDLKEILQELYLLRNSGSGCSQNLDSILIQLKFLADVLIFYSNALKKFFHPVLNKHAHDRFSKSTEHFLGESHIEDLQQLLLYNSESEMPLTKFVEKLCGKLELFVSAVNQQFSFQEIEVFPIFRKNCRNGMQVRLLSLSMHMMPLGLLKCVITWFSVHLSEKESRSILYCIKEGNNSASKAFAPLLHEWFRIGYSGKTSIEKFRQDLQHMFKRRHSFSSEKMKEACGFSFLSSDKQPHKSCDKNCLSYSSSSGSKNVSKYETPYSTGINLHIFFPDIAMKLNQHPRFHAANSSSVSFLNDPKPIDLIFFFHKAIKKDLDYLVLGSAQLEGHDELVIDFQKRFNLICFLHQIHSDAEDEIVFPALEAIGQLKNISLAYTFDHKHEVEHFSKMSRILDKMSELHLPVSTTDSKIRDKRMLRRHHLIMKLQERCKSMHKLLSDHINREEIEIWPIIREFFSNREQGKIIGCILGRISAEILQDMIPWLMASLTQEEQHVLMFLWSMATKNTMFDEWLSEWWNGYSLAKAADGSNDAPLQNLEPLEIISKYLSEDVLNALEEESFANESIRFLQKDLIGDNFELSNDNVKVHNAAQNYSQCSKCTNQFHDIKKHVCNEVKPVSIMTSQSVQYFDFDKSGHYDRLLKLSQDDLERVIRRVSRDSCLDPQEKSYIIQSLLTSRWIIRQKISSMEANIKSDGQEFPGKYPSYKDPLKQMYGCKHYKRNCKLLAPCCNQLHACIHCHDEVSDHLIDRKSITKMMCMKCLVVQPINATCSSVSCRNLSMAKYYCRICKIFEDEREIYHCPYCNLCRVGKGLGVDYFHCMNCNACMSRSLMIHTCREKSLEENCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTCFNYTCPICSKSLGDMQVYFRMLDALLAEEKMSDEFSGQTQVILCNDCGKKGAAPFHWLYHKCPCCGSYNTRVL* 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4186 1265 CDD Hr-like 45 175 - -
Mal5g4186 1265 SUPERFAMILY RING/U-box 1158 1209 - -
Mal5g4186 1265 Pfam CHY zinc finger 1030 1105 IPR008913 GO:0008270
Mal5g4186 1265 Pfam Hemerythrin HHE cation binding domain 46 177 IPR012312 -
Mal5g4186 1265 Gene3D nmb1532 protein domain like 614 787 - -
Mal5g4186 1265 Gene3D nmb1532 protein domain like 300 451 - -
Mal5g4186 1265 Gene3D nmb1532 protein domain like 37 195 - -
Mal5g4186 1265 ProSiteProfiles Zinc finger CTCHY-type profile. 1095 1158 IPR017921 -
Mal5g4186 1265 Gene3D - 1230 1265 - -
Mal5g4186 1265 ProSiteProfiles Zinc finger CHY-type profile. 1023 1092 IPR008913 GO:0008270
Mal5g4186 1265 Pfam Zinc-ribbon 1206 1263 IPR039512 -
Mal5g4186 1265 ProSiteProfiles Zinc finger RING-type profile. 1159 1201 IPR001841 -
Mal5g4186 1265 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 29 1265 - -
Mal5g4186 1265 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 29 1265 - -
Mal5g4186 1265 CDD Hr-like 620 766 - -
Mal5g4186 1265 SUPERFAMILY Zinc hairpin stack 1096 1150 IPR037275 -
Mal5g4186 1265 SMART ring_2 1159 1200 IPR001841 -
Mal5g4186 1265 CDD RING-H2_Pirh2 1158 1201 - -
Mal5g4186 1265 SUPERFAMILY CHY zinc finger-like 1021 1087 IPR037274 GO:0008270
Mal5g4186 1265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1152 1203 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4186 Mal-Chr5 112357804 112368377 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4186 37 861 C2H2 Transcription Factor Family AT3G18290 32.469 1.11e-124 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4186 K16276 - gmx:100802706 2004.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4186 5 112357804 112368377 Mal5g4186 5 112357804 112368377 ECH
Mal6g2642 6 66303153 66305689 Mal5g4186 5 112357804 112368377 PCT