Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4175 ATGGAACCTCCTCTGATCAACGACTCCACTTTCTCTTCCACTGACCATTCCTTGTCCGAAATTTGGCCTTTCCCTCCCCAAAACAACAACACTAGTAGTGAAAAAAGAAACCACTCCCACTCCCTCTCCCTCTCGGACATCACCAAGCAGCATATAGAACTAGGAGTAGGAGGAGGAGGATCCTCTGATGACGATGAAAACGCTGCGTTTAAAGCCCAAACAGACTCAACTTCTTCTGAGGCAGCGCCACCTAAGCAGCAAGATTATATTCACGTCAGAGCCAGAAGAGGCCAAGCCACCGATAGCCACAGTCTCGCTGAAAGAGCAAGAAGAGAAAAGATTAGTGAGAGAATGAAAATTCTCCAAGATTTAGTCCCAGGATGTAACAAGGTAATTGGTAAAGCACTTGTGCTGGATGAGATAATCAATTATATTCAATCTTTGCAACGCCAAGTTGAGTTTCTTTCAATGAAGCTCGAGGCAGTTAACTCGACATTGAATATGCATCCATCTATTGACTGTTTCCCTTCAAAAGATCATGTAAATCTATCTAATCCAATTCAATGTTAA 570 0.4298 MEPPLINDSTFSSTDHSLSEIWPFPPQNNNTSSEKRNHSHSLSLSDITKQHIELGVGGGGSSDDDENAAFKAQTDSTSSEAAPPKQQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSTLNMHPSIDCFPSKDHVNLSNPIQC* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4175 189 Pfam Helix-loop-helix DNA-binding domain 102 149 IPR011598 GO:0046983
Mal5g4175 189 CDD bHLH_AtBPE_like 88 173 - -
Mal5g4175 189 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 148 IPR011598 GO:0046983
Mal5g4175 189 SMART finulus 104 154 IPR011598 GO:0046983
Mal5g4175 189 MobiDBLite consensus disorder prediction 1 48 - -
Mal5g4175 189 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 63 180 IPR024097 GO:0006355
Mal5g4175 189 Coils Coil 145 165 - -
Mal5g4175 189 MobiDBLite consensus disorder prediction 1 87 - -
Mal5g4175 189 Gene3D - 95 172 IPR036638 GO:0046983
Mal5g4175 189 PANTHER BNAC05G07950D PROTEIN 63 180 - -
Mal5g4175 189 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 96 168 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4175 Mal-Chr5 112219058 112220196 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4175 65 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 75.000 1.91e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal5g4175 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4175 - - gmx:100799646 223.402