Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4165 ATGGGTCGTGCAAAAATAGCTATGAAATATATCAAAAGTGAGAAATCTCGCAAACAAGCTTTCAAACAGAGAAAGCTTGGATTAAAAAAGAAAGTTTCTGAATTTTGTAAGAAATCTGGAGTAAAAGCTTGCCTTATTGTGTATGACGGGGATGATAATAGTGTTGAACCAATGACATGGCCGGAAGACCTTACAAGTGTAAAGTCCTTGCTTCAAGAATATCAGAATCAAAAGATTGAGAGAACTCCCAAGATATTTGATGTCAAGGACTACTTTGAAAATAAGAAAGTAGTGGTTGAAGTCGGAATTAACAAAGTGCGGAGAGATATCTTCAATACCATCTATCCAACTTGGCATCAACATTTTAGTAATATGGAAGAGAATCAACTCAGAGACTTCATTGCTACTATAAATGCTAAGATTCAAGCATGCAATCACAAAATTAGCATGTTGAAAAATATGCAACAAAGTGAAACTAGCTTCTTGGAAAACAATGCTCAGATGCAAAATATGGTTCAGGAGAGTGTTGTTTCCTCACATTCAAGCCAAGTCAATATCATACATAGTACCTCTGAAATGCATCAGCACGTCAATGAAATCAGTGAGTTGGTGGATATAAACAATCATGTTGATTTGCCTCATAATTCCTCAAACCAACTTCATGATATTACTGAGATGATTGATTTTACTGATCTTGGTGATTGGTCTCCTAGTTTATCATCAAACCAACTTAATGATGGGCTTGTGGAGGGGAATGCTCAAGTTGTTAATCCTGATTATATTGGTGAGGAGGTGGATTTTACTAGTCTTGATGATTTGCCTACAAGTTCATCAACAAACCAACTTAGTCAACTTGTTGATCTTGATGACTGGATGAATCAACTAGATGATGGTGTTAATTGTTGTACCTGA 912 0.3586 MGRAKIAMKYIKSEKSRKQAFKQRKLGLKKKVSEFCKKSGVKACLIVYDGDDNSVEPMTWPEDLTSVKSLLQEYQNQKIERTPKIFDVKDYFENKKVVVEVGINKVRRDIFNTIYPTWHQHFSNMEENQLRDFIATINAKIQACNHKISMLKNMQQSETSFLENNAQMQNMVQESVVSSHSSQVNIIHSTSEMHQHVNEISELVDINNHVDLPHNSSNQLHDITEMIDFTDLGDWSPSLSSNQLNDGLVEGNAQVVNPDYIGEEVDFTSLDDLPTSSSTNQLSQLVDLDDWMNQLDDGVNCCT* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4165 303 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal5g4165 303 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Mal5g4165 303 PANTHER MADS BOX PROTEIN 3 294 - -
Mal5g4165 303 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal5g4165 303 PANTHER PROTEIN, PUTATIVE-RELATED 3 294 - -
Mal5g4165 303 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Mal5g4165 303 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Mal5g4165 303 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4165 Mal-Chr5 112099174 112100085 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4165 1 147 Type I MADS-box Gene Family AT5G55690 31.788 1.62e-18 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal5g4165 SRF-TF 1.7e-09 No_clan