Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4160 ATGGGTCGTGCAAAAATAGCTATGAAATATATCAAAAGTGAGAAATCTCGCAAACAAGCTTTCAAACAGAGAAAGCATGGATTAAAAAAGAAAATTTCTGAATTTTGTAAGAAGTCTGGAGCAAAAGCTTGCTTTATCGTGTATGATGGTGATGATAACAATGTTGAACCAATGACATGGCCAGAAGACCTTACAAGTGTAAACTCCTTGCTTCAAGAATATCAGAATCAAAAGATTGAGAGAACTCCCAAGATATTTGATGTCAAGGACTACTTTGAAAATAAGAAAGTAATGGTTGAAGTCGGAATTAACAAAGTGCGGAGAGATATCCTCAATACCATCTATCCAACTTGGCATCAACATTTTAGTAACATGGAAGAGAATCAACTCAGAGACTTCATTGCTACTATAAATGCTAAGATTCAAGCATGTACTCACAAAATTAGCATGTTGAAAAATATGCAACAAAGTGAAACTAGCTTCTTGGAAAACAATGCTCACATGCAAAATATGGTTCAAGAGAGTGTTGTTTCCTCACATTCAAGACAAGTCAATATCATACATAGTACGTCTCAAATGGATCAACACGTCAATGATATTAGTGAGTTGGTGGATATAAACAATCATGTTGATTTGCCTCATAATTCCTCAACAAACCAACTTCATGATATTACTGAGATGATTGATTTTACTGATCTTGGTGACTGGTCTCCTAGTTTATCATCAAACCAACTTAATGATGGGCTTGTGGAGGGGAATGCTCAAGTTGTTAATCCTGATTATATTGGTGAGGAGGTGGATTTTACTAGTCTTGGTGATTTGCCTACAAGTTCATCAACAAACCAACTTAGTCAACTTGTTGATCTTGATGACTGGATGAATCAACTAGATGATGGTGTTAATTTGTACTGGGCTAGTCAACCTGATCAGTTTGCTTGGAATGATCTTTCTTTTTTATCTCAAAATGAACAGAGCAATGCTTAG 984 0.3557 MGRAKIAMKYIKSEKSRKQAFKQRKHGLKKKISEFCKKSGAKACFIVYDGDDNNVEPMTWPEDLTSVNSLLQEYQNQKIERTPKIFDVKDYFENKKVMVEVGINKVRRDILNTIYPTWHQHFSNMEENQLRDFIATINAKIQACTHKISMLKNMQQSETSFLENNAHMQNMVQESVVSSHSRQVNIIHSTSQMDQHVNDISELVDINNHVDLPHNSSTNQLHDITEMIDFTDLGDWSPSLSSNQLNDGLVEGNAQVVNPDYIGEEVDFTSLGDLPTSSSTNQLSQLVDLDDWMNQLDDGVNLYWASQPDQFAWNDLSFLSQNEQSNA* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4160 327 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal5g4160 327 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 53 IPR002100 GO:0003677|GO:0046983
Mal5g4160 327 PANTHER PROTEIN, PUTATIVE-RELATED 3 297 - -
Mal5g4160 327 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal5g4160 327 PANTHER MADS BOX PROTEIN 3 297 - -
Mal5g4160 327 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Mal5g4160 327 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Mal5g4160 327 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4160 Mal-Chr5 111998667 111999650 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4160 1 147 Type I MADS-box Gene Family AT5G55690 31.788 3.38e-18 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal5g4160 SRF-TF 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4160 - - mtr:MTR_4g107170 369.392