Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4150 ATGGCTGCTTCTTCCTCAGATCCTCCTTCTTCACGACACCATACCTACGACCGTAAACAAAAATCACTCGGCCTCTTATGCACCAATTTCTTGAGCTTGTATAACAAAGACGACGTTCGCTTAATCGGTCTGGATGATGCCGCTGCCAAATTAGGTGTTGAGAGAAGACGGATCTATGATATTGTCAATGTTTTGGAGAGCATCGGGGTTCTTGCAAGAAAAGCAAAGAATCAGTATACCTGGAAAGGGTTTGGGGCAATTCCTGTTGCTTTACAGGAGCTCAAGGAAGAGGGTTTATGGCAGACTATGAATTCACAAGAAGGTGGCAATGAAGATGTTAAGGTTTCGGATGAAGAGGATGAGGAAGAATTATTATCCCAATTATCTCAAACCACTGGAAGTCAGGGTGAATCATTATCCCAACCCACTGGAAGTCATAGTGATAATCCAAACCCTAATTCTGCTTTTCCCAGATCTCTGAAAAATGATAGAAGAGAAAAATCTTTGGCACTGCTTACTCAGAATTTTGTCAAGCTCTTTGTCTGCTCTAACCTGGAAATGATATCCCTTGATGATGCAGCGAGGTTGTTGCTTGGAGATGCATATAATTCATCAACAATGAGAACAAAAGTTAGGCGCCTTTATGATATTGCAAATGTGCTAACCTCCATGAACCTCATTGAGAAGACCCATACCACAGATACAAGAAAACCAGCATTCAGGTGGCTTGGCTTACAAGGGAAGACATTGAATGAGGCATCACTTTACAATTCAAAACAGAATGAGTCTAGGAAAAGGGCATTTGGAAATGATGTCACAAACATAAGCTTTGCCAGGAATAGAACGGATTTGTTCATGGGTGGGGACTTTGGCCAGAACCTTAAGAAGCAAAAGACAATGGAAAATGATAGTGGGCTATGTCAGGAAGATACAAAACAAGGCATTAAACAGACTTCAACCAACTATCAATTTGGTCCTTTTGCTCCTGCCTTTGTATCCAAAGCTGGAACCTCTGAGAATAAAGTGAAGCAGGTGCATGACTGGGAGAGTCTCGCTACTGAACATTGCCCTCAGTATCAAAACCAAGCTTTGAAAGAACTCTACTCTCATTACATGGAAGCATGGAAATCTTGGTACTCTGAAGTTGCTGGGAAGAGGTCAACGCAAGTTTTGTAG 1176 0.4192 MAASSSDPPSSRHHTYDRKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIGVLARKAKNQYTWKGFGAIPVALQELKEEGLWQTMNSQEGGNEDVKVSDEEDEEELLSQLSQTTGSQGESLSQPTGSHSDNPNPNSAFPRSLKNDRREKSLALLTQNFVKLFVCSNLEMISLDDAARLLLGDAYNSSTMRTKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGLQGKTLNEASLYNSKQNESRKRAFGNDVTNISFARNRTDLFMGGDFGQNLKKQKTMENDSGLCQEDTKQGIKQTSTNYQFGPFAPAFVSKAGTSENKVKQVHDWESLATEHCPQYQNQALKELYSHYMEAWKSWYSEVAGKRSTQVL* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4150 391 MobiDBLite consensus disorder prediction 126 158 - -
Mal5g4150 391 MobiDBLite consensus disorder prediction 103 159 - -
Mal5g4150 391 SUPERFAMILY "Winged helix" DNA-binding domain 17 81 IPR036390 -
Mal5g4150 391 SUPERFAMILY "Winged helix" DNA-binding domain 166 245 IPR036390 -
Mal5g4150 391 Gene3D - 13 86 IPR036388 -
Mal5g4150 391 Gene3D - 159 246 IPR036388 -
Mal5g4150 391 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 5 382 - -
Mal5g4150 391 SMART E2F_TDP_2 164 244 IPR003316 GO:0005667|GO:0006355
Mal5g4150 391 SMART E2F_TDP_2 18 83 IPR003316 GO:0005667|GO:0006355
Mal5g4150 391 PANTHER TRANSCRIPTION FACTOR E2F 5 382 IPR015633 GO:0000978|GO:0006357
Mal5g4150 391 Pfam E2F/DP family winged-helix DNA-binding domain 166 244 IPR003316 GO:0005667|GO:0006355
Mal5g4150 391 Pfam E2F/DP family winged-helix DNA-binding domain 19 83 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4150 Mal-Chr5 111922168 111925636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4150 13 382 E2F-DP Transcription Factor Family AT3G48160 55.118 1.45e-124 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Mal5g4150 E2F_TDP 1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4150 K09391 - gmx:100795252 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4150 5 111922168 111925636 Mal5g4150 5 111922168 111925636 ECH