Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4123 ATGACTAGTACTCATCTTTCTTATCAAAGGGATCGCCGTATCCTATCATTTCCGGCGGTTCACCCATGTGAATCCATATCTCCCACAACACTCATCACTTCTCTAATCACTCTCTCACAAACCATATCAAATTTCCAACCTCAAATATTCCCAACTCAAAAACGTAACGCAAGAGAAACAATACGTCAAATTAGTATAATTTCAATTTTCCTCAACGAAATTAAAGATAGTGGTACCATTATTCCTAACTCAATTATCCTATGCTTTTCTGAGCTTCACTTCACTTTACAAAAGATTCATTTCTTAATGCAAGATTGTACTTTAGAAGGTTCTCGTCTCTTATTGCTTGCGAAATCTCAACACGTGGCATCTCAGTTTGGTTCTCTTATTCGTGCTGTGGCTATAACACTAGATGTTTTACCCTTACACAAGGTGGAAATTTGCTGCGAAGTTAAGGAGTTAGTTGAATTGGCAGCTAAACAAGCGAGGAAAGCTAAATTTGAAGTTGACCCCAACGACGAGATTGCTACCAAAAAACTTCATACAGTTCTTCATCAATTCGAGAGAGGAACTGAACCTAACGTGAATACCATGCATGAAATTCTTGATTACCTCAAAATCAAGAGCTGGAATGAATGTGACAGAGAAATCAAATTCTTAGAAAACGAGGTAAGCTTCTTAGAATATAATAATTGCGACGAACGCGAGGTTCCGTTGTTGAGCTCTTTGGTTGGATTTTTGAGCTACTGTAGAGTAGTGATATTCGAAAATTTTGATGAAAATTCTGATAAACTCGAAGCTCGTCGAAGCACGGAGATAATCACTATAACATGTTTGAATCCAGAGGATTTCCGGTGTCCAATTTCACTCGAATTAATGACTGATCCAGTAACAGTTTCAACAGGACAAACCTACGATCGTGTCTCAATTCAGACATGGCTTAAAGCAGGAAACACAACATGCCCCAAAACAGGGGAGAGTCTTAAAAACACAGAGTTAGTCCCAAACACAACGCTGAAGAAGCTTATCCAACAATTCTGCTTCGATAAAGGAATTTCGTATTTCAAATCATGTAACCGTAACCGTGACATAACGAAAACAATTTTACCCGGCAGTTCTGCAGCAGCACATGCTATGCAGTTTCTATCATGGTTTCTAACACGAAGACTCGTGTTTGGAACAGAGCAACAGAAGAACAAAGCAGCTTACGAGATTCGTTTGTTAACAAGGTCAAGCATTTTTAACAGGGCGTGTTTGATTGAAGTTGGAGCTGTGTCACCACTGTTGGAACTTTTAGCTACGGAGGATAGAACGATGCAAGAGAATGCAATCTCTGCTTTGTTGAAGCTTTCAAAATATGCAACTGGGCCTGAAAATATAATAGCCCATGAAGGTTTAAAGCCCGTTGTTTATGTTCTAAACAATGGGCTTAGCCTTGAAGCTCGTCAAATTGCAGCTGCTATAATATTCTATCTTTCTTCAGTGAAAGAGTATAGAAAATTAATAGGTGAAAATCAAGATGCTATTTATGGTTTAGTTGAATTGGTTAAAGAAGGAACAACCTTCGGGAAAAAGAACGCAGTTGTTGCAATTTTTGGACTTCTTTTACTTCCTAGGAATCATCAACGTGTGCTTGAAGCAGGCGTTGTTCACGCGCTTGTTTCTATTTTGGATTCCTTGTACAATAAGGAAGAGCTTGTAACTGAAACTTTGGCTGTGCTTGCAGCCCTTGCTGAGAATTTTGATGGAGCCAACGCTTTGTTGGAAGCTTCTGTGTTGCCGTTGGTTACTGGGATGTTGCAATCTGCTCCTTCGCGTGCTGGGAAGGAACATTGTGCTTCGATATTATTGTCGCTGTGTGTTAATGTTGGTGCTGATGTTGTTGGTGTTCTTGCTAAGGATGTTACACTTATGCCTTTGCTTTATTCGCTTCTTACGGATGGTACTTCTCATGCTGCTAAGAAAGCGCGTTTTCTTATTAAAGTTCTGCAGGATTTCAATGAAACTGCAACTTCTCGATTGAAAGGTTCCTCAGTGCTACGCCAATTGAATGTGTTAGAGCTTAGAAATTAG 2073 0.3946 MTSTHLSYQRDRRILSFPAVHPCESISPTTLITSLITLSQTISNFQPQIFPTQKRNARETIRQISIISIFLNEIKDSGTIIPNSIILCFSELHFTLQKIHFLMQDCTLEGSRLLLLAKSQHVASQFGSLIRAVAITLDVLPLHKVEICCEVKELVELAAKQARKAKFEVDPNDEIATKKLHTVLHQFERGTEPNVNTMHEILDYLKIKSWNECDREIKFLENEVSFLEYNNCDEREVPLLSSLVGFLSYCRVVIFENFDENSDKLEARRSTEIITITCLNPEDFRCPISLELMTDPVTVSTGQTYDRVSIQTWLKAGNTTCPKTGESLKNTELVPNTTLKKLIQQFCFDKGISYFKSCNRNRDITKTILPGSSAAAHAMQFLSWFLTRRLVFGTEQQKNKAAYEIRLLTRSSIFNRACLIEVGAVSPLLELLATEDRTMQENAISALLKLSKYATGPENIIAHEGLKPVVYVLNNGLSLEARQIAAAIIFYLSSVKEYRKLIGENQDAIYGLVELVKEGTTFGKKNAVVAIFGLLLLPRNHQRVLEAGVVHALVSILDSLYNKEELVTETLAVLAALAENFDGANALLEASVLPLVTGMLQSAPSRAGKEHCASILLSLCVNVGADVVGVLAKDVTLMPLLYSLLTDGTSHAAKKARFLIKVLQDFNETATSRLKGSSVLRQLNVLELRN* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4123 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 548 592 IPR000225 GO:0005515
Mal5g4123 690 SUPERFAMILY RING/U-box 281 354 - -
Mal5g4123 690 SMART arm_5 411 452 IPR000225 GO:0005515
Mal5g4123 690 SMART arm_5 537 579 IPR000225 GO:0005515
Mal5g4123 690 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Mal5g4123 690 CDD RING-Ubox_PUB 284 326 IPR045210 -
Mal5g4123 690 Pfam Armadillo/beta-catenin-like repeat 415 451 IPR000225 GO:0005515
Mal5g4123 690 Gene3D - 362 686 IPR011989 -
Mal5g4123 690 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Mal5g4123 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 353 IPR013083 -
Mal5g4123 690 PANTHER U BOX DOMAIN-CONTAINING 9 673 - -
Mal5g4123 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 465 IPR000225 GO:0005515
Mal5g4123 690 SUPERFAMILY ARM repeat 394 664 IPR016024 -
Mal5g4123 690 Pfam U-box domain 281 348 IPR003613 GO:0004842|GO:0016567
Mal5g4123 690 PANTHER OS07G0532750 PROTEIN 9 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4123 Mal-Chr5 111618257 111620329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4123 5 672 U-box Gene Family AT1G60190 39.470 2.37e-166 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4123 - - mtr:MTR_4g107010 1152.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4123 5 111618257 111620329 Mal2g2364 2 29478644 29480704 ECH
Mal5g4123 5 111618257 111620329 Mal5g4123 5 111618257 111620329 ECH