Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4104 ATGTTTCCTTCAGTTACACCTAATTCTTTCATGGTTCTTGAAACAAATCTCAGAGGAAACTATCCTTCACAATCACAATCAATGCACTTGCAAGAAAACTTCTTGAAACCAAGGATGAAGGATGATCTAAATCCTTTTGGTGCTCATTCCTCTCATGGTAATTTCTTACAAGATTTTCACAATATTGATCAGTTCCATCATGTGCATGGATCATCATCCTCCAATCAAGTTTTTGGGGTCCAAACTCAAAACTTTGATCTATTTGGTAATGCAGAATGTGCAAATACAGATTTTGAAGTGTATGATGGAAAGTCTTTTGCTGAGAATAATAATGGTAGTGAGCATGAACATAACCTTATTGACAATTTTCAATATGATGGTTATAATTTGAATATCCCTAGAAGGAATGAACTTGATCTTATGGTTGAAAACCATAGTTATTTTTCCTTCAATAACCCTTCAGAAACCAAGCCATTGAATTGTGTTGTACCAGAGGATGAAGTCTCAAGCATAGCACCGACAAATTATTTCCAAAGAGCTGGATTAAATAGAAACAACAGGTTATTATCTCCTACCACAAGACGAGCATTTAAAGCGAGGAAGAAAACAGAAATAGTGAAGGGGCAATGGACAGCGGATGAAGATAGATTGTTGGCTCAAATGGTGGAACAATATGGAATCAGGAAGTGGTCTCATATTGCTCAGAAGTTACCTGGAAGAATAGGGAAGCAGTGCAGAGAAAGATGGCATAACCATTTAAGGCCTGACATTAAGAAAGATATATGGACTGATGAAGAGGATAAGGTATTGATCCAAGCTCATGAAGAGATAGGAAATAAGTGGGCAGAGATTGCGAAAAGATTGCCGGGAAGAACTGAGAATTCGATAAAAAACCATTGGAATGCAACAAAGAGAAGGCAATATTCCAAAAGAAAGTGTCGTTCGAAGTATCCAAGAAGCACTCTTCTGCAGGAATATATCAAAAGCTTGAACTTGGACCAAAATCCACCTAGAGACTTTCGAAAAAGATCTTCTGCTAAGGCAAAGAAAACCATTACTTGTAGCACAAGCAAAGCAGCGCAACAAATTCCTCAGCCACAGATTGCAAATCAATTTTGTCCTAATGACCGATCGGTGCCAAACTATGAGTTCAATGATTTTTCTTTGGATGATAATTTGTTTGAAGAAGAGTGTGGTATTGTTTCTCTGCTAGATGATATGTCAAGTGTTCCTACTATGGATGAGAAAGAGTTTGATGATAAGCAATGTGATAAGGGAAGCATGGAAGTTGTTAATCTTGATGAGCCTAAATTTGAGAAGCAGGTTGAAGTTAAGAAGGACTTGGATTTGGTGGAGATGATCTCTCAGGTTAATCAAAGTATTAATTGA 1389 0.3715 MFPSVTPNSFMVLETNLRGNYPSQSQSMHLQENFLKPRMKDDLNPFGAHSSHGNFLQDFHNIDQFHHVHGSSSSNQVFGVQTQNFDLFGNAECANTDFEVYDGKSFAENNNGSEHEHNLIDNFQYDGYNLNIPRRNELDLMVENHSYFSFNNPSETKPLNCVVPEDEVSSIAPTNYFQRAGLNRNNRLLSPTTRRAFKARKKTEIVKGQWTADEDRLLAQMVEQYGIRKWSHIAQKLPGRIGKQCRERWHNHLRPDIKKDIWTDEEDKVLIQAHEEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRSTLLQEYIKSLNLDQNPPRDFRKRSSAKAKKTITCSTSKAAQQIPQPQIANQFCPNDRSVPNYEFNDFSLDDNLFEEECGIVSLLDDMSSVPTMDEKEFDDKQCDKGSMEVVNLDEPKFEKQVEVKKDLDLVEMISQVNQSIN* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4104 462 ProSiteProfiles Myb-like domain profile. 254 304 IPR001005 -
Mal5g4104 462 Gene3D - 206 259 - -
Mal5g4104 462 CDD SANT 210 253 IPR001005 -
Mal5g4104 462 SUPERFAMILY Homeodomain-like 205 300 IPR009057 -
Mal5g4104 462 Gene3D - 261 326 - -
Mal5g4104 462 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 257 IPR017930 -
Mal5g4104 462 CDD SANT 262 304 IPR001005 -
Mal5g4104 462 ProSiteProfiles Myb-like domain profile. 202 253 IPR001005 -
Mal5g4104 462 PANTHER BNAC03G62830D PROTEIN 146 405 - -
Mal5g4104 462 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 258 308 IPR017930 -
Mal5g4104 462 PANTHER MYB PROTEIN-RELATED 146 405 - -
Mal5g4104 462 Pfam Myb-like DNA-binding domain 262 301 IPR001005 -
Mal5g4104 462 Pfam Myb-like DNA-binding domain 207 253 IPR001005 -
Mal5g4104 462 SMART sant 258 306 IPR001005 -
Mal5g4104 462 SMART sant 206 255 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4104 Mal-Chr5 111425144 111427033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4104 153 407 MYB Transcription Factor Family AT4G18770 56.716 2.73e-90 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal5g4104 Myb_DNA-binding 4.6e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4104 5 111425144 111427033 Mal2g2389 2 29927191 29931558 ECH
Mal5g4104 5 111425144 111427033 Mal5g4104 5 111425144 111427033 ECH
Mal2g2389 2 29927191 29931558 Mal5g4104 5 111425144 111427033 PCT