Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4074 ATGGCATCATCATCATCCAGCTCTTACAATTCTCCTTGTGCTGCCTGCAAATTTTTGAGGAGAAAATGCATGCCAGGATGCATCTTTGCACCTTACTTTCCACCGGAAGAGCCACAAAAATTTGCAAACGTTCACAAAATATTTGGTGCTAGCAATGTTACAAAGCTTCTCAACGAACTTCTCCCACACCAAAGAGAGGATGCAGTGAACTCACTTGCTTATGAAGCCGAAGCACGAGTGAGGGATCCAGTTTATGGATGTGTAGGTGCCATCTCTTTCCTTCAAAGACAAGTTCAAAGGCTTCAAAAGGAACTTGATGCTGCTAACACCGATCTTCTTCGCTATTCCCTCACCGATCATATCCCTCCTGCTCCTCCAGCATCTCTTTCTGTGCCTCCAGGAATGGTATCAGTTCAACAAATGCCACAAAGAGAGTTAATTAGTGCAAGGAATGAAGGAAGTACTGGAGGGTTTTATACACAATCTCCTACTACTACTTATTCTTCTTTTCCTTATTCTCTTCCTTGGACTGATACTTCCTCAGAGGATATGAGTAGAGGAGGAGGAGGAGGAAATCATTTGTGA 585 0.4325 MASSSSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANTDLLRYSLTDHIPPAPPASLSVPPGMVSVQQMPQRELISARNEGSTGGFYTQSPTTTYSSFPYSLPWTDTSSEDMSRGGGGGNHL* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4074 194 PANTHER ELONGATED PETIOLULE 1 4 192 - -
Mal5g4074 194 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 192 - -
Mal5g4074 194 Pfam Lateral organ boundaries (LOB) domain 12 108 IPR004883 -
Mal5g4074 194 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Mal5g4074 194 Coils Coil 91 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4074 Mal-Chr5 111034467 111035051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4074 3 192 AS2 family AT5G63090 64.583 8.43e-79 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mal5g4074 LOB 3.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4074 - - gmx:100803667 299.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4074 5 111034467 111035051 Mal2g2414 2 30288867 30289457 ECH
Mal5g4074 5 111034467 111035051 Mal5g4074 5 111034467 111035051 ECH
Mal5g4074 5 111034467 111035051 Mal2g2414 2 30288867 30289457 PCT