Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4069 ATGAACCCCTACGACAATCGCTACTCCGATTCCACTTCTTTTCGCGGCCGCCGCAGTGATCTTGTTGGACCTATGCCGCCGCCTAATTATGGCCGCAGCGGTCCTGCTCCTTATGCCGCACATGGACCCACCGGTTTTGGATCCGCACCCGTTACACCGATTCCTCATTTTCTACCTCCTCCTGGAGGAGGTGGATTTAGCATAGGTCGTGGTGGTGGTGGTGGAGGATTTGGCCCTAGATTTGGAAACGGTCACGCTAGTGATAGAAAGTATGATACAGGTGGTCGCCATGGTGGTGGTGGAAGAGGTCGTGGTGGCGGAGGTGGTAGTTTTAGTGGTGGAAGAGGTCGCGGTGGTGGTGGCAGAGGAGGGAGTGGAGGGAGAGGTGGTGGGTTTGGAGGTAGACATGGATCTTCTAAAGATGATTTGAACAACATTACACTTCCGAAACAAGATTTTCGGAATTTGGTTCCTTTTCAGAAGAATTTCTATGTTGAAAGTCCTTTGATAACAGCCATGTCTGATCAGCAAGTTATGCAGTATCGTGCTAGTAGGGATATTACAGTTGAAGGGCATGATGTGCCGAAACCAATTCGGGCTTTTCATGAGGCGAATTTTCCTGATTACTGCCTTGAGGTTATTGCCAAGTTGGGTTTTGTTGAGCCTACTCCAATTCAAGCTCAGGGTTGGCCTATGGCTCTTACGGGTAGAGATTTAATTGGCATTGCTGAGACTGGCTCGGGTAAAACATTGTCGTATCTACTTCCTGCTATAGTTCATGTCAGTGCACAACCTCGATTGGTACAAGGGGAAGGTCCTGTTGTCCTTGTTTTAGCACCAACTAGAGAGTTAGCTGTTCAAATTCAACAAGAAGCTATGAAATTTGGGTCACGGTCAAATATTAGATGTACATGCATATACGGCGGTGCTCCCAAGGGCCCTCAAATTCGTGACCTTAGAAATGGTGTTGAGATTGTTATTGCTACACCTGGTCGTTTAATAGATATGTTGGAAGCTCAACACACAAACTTGCAGAGAGTGACATACCTTGTCTTGGATGAAGCTGATCGAATGTTGGACATGGGTTTTGAACCTCAGATTCGGAAGATTGTAAACCAGATTCGACCAGATAGGCAGACATTATACTGGAGTGCAACATGGCCAAAGGAGGTTGAAACTCTGGCAAGGCAGTTTCTGCACAACCCATATAAGGTAGTTATTGGGTCACCATATCTGAAAGCAAATCAATCTATAAATCAAGTTGTTGAAGTTGTCACCGACATGGAGAAATATAACAGATTGATCAAGTTGCTGAAAGAAGTGATGGATGGGAGCCGAATTCTAATATTTACGGAAACAAAAAAGGGATGTGACCAAGTTACAAAACAACTGAGAATGGATGGATGGCCAGCCTTATCCATCCATGGTGATAAAAACCAGGCTGAGAGGGACTGGGTTTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAGGACATAAAATGTGTGGTCAATTATGATTTTCCATCAAGCCTCGAAGATTATGTCCACAGAATTGGTCGAACTGGTCGTGCAGGGGCTAAAGGAACTGCATACAGTTTTTTTACCAGTGCTAATGCAAAGTATGCTAGGGATTTGATTAAGATCTTACAAGATGCTGGTCAGGTTGTTAGTCCTGCATTGTCCGCACTGACTCGGTCAGCTGGTTTTGGTCAACATGCATCAAGGGGAGGCTTTCGCTCAAGAGGACGGGGAGGCTATGGCAATCGGGGTTCAACGTCAGGTTCCAATGCCATTCCTGTAGGTGGGAAGAGGCCATGGCAGTTTCGGTAG 1872 0.4626 MNPYDNRYSDSTSFRGRRSDLVGPMPPPNYGRSGPAPYAAHGPTGFGSAPVTPIPHFLPPPGGGGFSIGRGGGGGGFGPRFGNGHASDRKYDTGGRHGGGGRGRGGGGGSFSGGRGRGGGGRGGSGGRGGGFGGRHGSSKDDLNNITLPKQDFRNLVPFQKNFYVESPLITAMSDQQVMQYRASRDITVEGHDVPKPIRAFHEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLSYLLPAIVHVSAQPRLVQGEGPVVLVLAPTRELAVQIQQEAMKFGSRSNIRCTCIYGGAPKGPQIRDLRNGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVNQIRPDRQTLYWSATWPKEVETLARQFLHNPYKVVIGSPYLKANQSINQVVEVVTDMEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTKQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGRAGAKGTAYSFFTSANAKYARDLIKILQDAGQVVSPALSALTRSAGFGQHASRGGFRSRGRGGYGNRGSTSGSNAIPVGGKRPWQFR* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4069 623 PANTHER LD32873P 140 608 - -
Mal5g4069 623 MobiDBLite consensus disorder prediction 584 623 - -
Mal5g4069 623 Gene3D - 410 581 IPR027417 -
Mal5g4069 623 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 199 227 IPR014014 GO:0003724
Mal5g4069 623 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 140 608 - -
Mal5g4069 623 Pfam DEAD/DEAH box helicase 223 394 IPR011545 GO:0003676|GO:0005524
Mal5g4069 623 SMART ultradead3 218 421 IPR014001 -
Mal5g4069 623 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 433 578 IPR001650 -
Mal5g4069 623 MobiDBLite consensus disorder prediction 68 146 - -
Mal5g4069 623 MobiDBLite consensus disorder prediction 1 45 - -
Mal5g4069 623 CDD DEADc_DDX5_DDX17 211 406 - -
Mal5g4069 623 CDD SF2_C_DEAD 418 548 - -
Mal5g4069 623 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 351 359 IPR000629 -
Mal5g4069 623 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 230 405 IPR014001 -
Mal5g4069 623 Pfam Helicase conserved C-terminal domain 429 539 IPR001650 -
Mal5g4069 623 SMART helicmild6 458 539 IPR001650 -
Mal5g4069 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 559 IPR027417 -
Mal5g4069 623 Gene3D - 172 409 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4069 Mal-Chr5 110943667 110947964 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4069 187 559 Eukaryotic Initiation Factors Gene Family AT3G19760 35.561 4.56e-70 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4069 K12823 - gmx:100817092 921.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4069 5 110943667 110947964 Mal5g4069 5 110943667 110947964 ECH