Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4036 ATGTCTATCACTTCCTTCAAATCTCTCACAATGGCAGAATCATGCTTACTCTCTCAACCTTCACTCCTCTACACCAAATCCAAATCCCCATTTATCCCAAATTCTGCTAAGCCCTTCAAAGTACAAAACCCATCATACAATTCTTCAAAGTTTTCATCATCTGTGTCACTCATTGCAAGGAGAAGAACCCGTTATTCTTCTTTGGTTACATTTGTTGCACAGACATCAGATTGGGCTCAACAGGAAGAGAAAGAAGATGGATCTACTTGGGAGAATCAAGGTGATGCTACATGGGTTGGTGAAACTGAAAGTAACGAGAGTGAAGGTGAAGTTGCGAGTTTTGAGGATCCTTCTGAAGATTTGAAGATTTTTGTTGGGAATTTACCTTTTAATGTTGATAGTGAGAAATTGGCTCGGCTTTTTGAGCAATCTGGGACTGTTGAAGTTGCTGAGGTAATTTATAATAGGGATACTGACAGAAGTCGTGGGTTCGGATTTGTGACAATGAGTACAGCTGAAGAAGTTGAGAGAGCCGTGAGCAAATTCAGTGGCTTTGAATTAAATGGAAGATTGTTGACTGTTAATAAGGCTGCTCCAAGAGGAGCACCACTACGGCTTGAGCGCACACAACGCACCTACGATGTCGGTTCAAGACTCTATGTTGGTAACTTGCCATGGGACGTTGACAACTCTAGCTTGGAGCAACTTTTCAGCAAATATGGTAAGGTTGAGAGTACTCGGATAGTCTATGAGAGAGAGACCGGTCGATCACGTGGTTTTGGCTTTGTAACAATGTCCAACAAGGCTGAGATGAATAATGCTATTGCTGCTCTTGACGGTCAGAGCGTGAATGGGAGGGCAATTAGAGTGAATGTTGCTGAGGAAAGGCCCCTGCGCAATTAG 903 0.4297 MSITSFKSLTMAESCLLSQPSLLYTKSKSPFIPNSAKPFKVQNPSYNSSKFSSSVSLIARRRTRYSSLVTFVAQTSDWAQQEEKEDGSTWENQGDATWVGETESNESEGEVASFEDPSEDLKIFVGNLPFNVDSEKLARLFEQSGTVEVAEVIYNRDTDRSRGFGFVTMSTAEEVERAVSKFSGFELNGRLLTVNKAAPRGAPLRLERTQRTYDVGSRLYVGNLPWDVDNSSLEQLFSKYGKVESTRIVYERETGRSRGFGFVTMSNKAEMNNAIAALDGQSVNGRAIRVNVAEERPLRN* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4036 300 CDD RRM_HP0827_like 218 294 - -
Mal5g4036 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 199 IPR000504 GO:0003723
Mal5g4036 300 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC-RELATED 4 300 - -
Mal5g4036 300 Gene3D - 72 204 IPR012677 -
Mal5g4036 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 295 IPR000504 GO:0003723
Mal5g4036 300 CDD RRM_HP0827_like 122 199 - -
Mal5g4036 300 Gene3D - 205 300 IPR012677 -
Mal5g4036 300 PANTHER OS02G0815200 PROTEIN 4 300 - -
Mal5g4036 300 SUPERFAMILY RNA-binding domain, RBD 117 205 IPR035979 GO:0003676
Mal5g4036 300 SMART rrm1_1 122 195 IPR000504 GO:0003723
Mal5g4036 300 SMART rrm1_1 218 291 IPR000504 GO:0003723
Mal5g4036 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 192 IPR000504 GO:0003723
Mal5g4036 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 289 IPR000504 GO:0003723
Mal5g4036 300 SUPERFAMILY RNA-binding domain, RBD 216 297 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4036 Mal-Chr5 110180916 110183140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4036 123 299 Eukaryotic Initiation Factors Gene Family AT3G16380 31.073 2.90e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4036 - - gmx:100811487 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4036 5 110180916 110183140 Mal2g2450 2 30859497 30861607 ECH
Mal5g4036 5 110180916 110183140 Mal5g4036 5 110180916 110183140 ECH
Mal5g4036 5 110180916 110183140 Mal2g2450 2 30859497 30861607 PCT