Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4028 ATGACAACAATAACAACCACTTCTTCACTCTCTTCCCTCTTCTTCATTTTCTCTCTCCTCACTTTTTCCCTCATTTCCTCTTCACCCCTTCAAGACCCTGATTTAGTTACACAAGAAGTTAACAGGAAAATCAATGGCTCATTAGCTAGAAGAAATTTGGGGTACCTCTCATGTGGAAGTGGAAACCCAATTGATGATTGTTGGAGATGTGACCAAAACTGGGAAAAAAACAGACAAAGGCTAGCAGATTGTGCAATTGGGTTTGGTAAGAATGCCATTGGTGGTAAAAATGGTAAAATTTACGTCGTAACAGATTCCGGTGACGATGATCCGGTGACACCGAAACCAGGCACACTCCGTTTCGCTGTGATTCAAGACGAACCATTATGGATAATATTTGCAAGAGACATGGTGATTCAGCTAAAAGAAGAACTTATAATGAACTCATTCAAGACAATTGATGGAAGAGGAGCTAGTGTTCACATTGCTGGTGGTCCTTGTATTACAATTCAGTATGTGACTAATGTTATAATACATGGTATACACATACATGATTGTAAACAAGGTGGGAATGCTATGGTGAGGGACTCCCCAGGACATTATGGGTGGAGAACTGTATCAGATGGTGATGGTGTTTCAATCTTTGGTGGTAGTCATGTTTGGGTGGATCATTGTTCTTTGTCTAACTGTAATGATGGTTTGATTGATGCTATACATGGGTCCACTGCAATTACCATCTCTAACAATTACATGACACACCATGATAAAGTCATGCTTTTGGGTCATAGTGATACTTATACTCAAGACAAGAACATGCAAGTCACTATTGCTTTTAATCACTTTGGTGAAGGCCTTGTTCAAAGAATGCCAAGGTGTAGGCATGGTTATTTTCATGTGGTAAACAATGACTATACTCACTGGGAAATGTATGCTATTGGGGGAAGTGCTAATCCTACCATCAATAGCCAAGGAAACAGATTTGTAGCCCCCGATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAAGGTGAATGGAAGGGATGGAATTGGAGATCAGAAGGTGATTTATTGATAAATGGTGCATTTTTCACACCATCAGGAGCAGGTGGAGCATCATCAAGCTATGCAAGAGCTTCAAGTTTAAGTGCAAGACCATCTTCTCTGGTTGGTACGATAACGACTGGTGCTGGTGTACTACCTTGTAAGAAAGGTTCTCGTTGCTGA 1236 0.4094 MTTITTTSSLSSLFFIFSLLTFSLISSSPLQDPDLVTQEVNRKINGSLARRNLGYLSCGSGNPIDDCWRCDQNWEKNRQRLADCAIGFGKNAIGGKNGKIYVVTDSGDDDPVTPKPGTLRFAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPGHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPEGEWKGWNWRSEGDLLINGAFFTPSGAGGASSSYARASSLSARPSSLVGTITTGAGVLPCKKGSRC* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4028 411 SUPERFAMILY Pectin lyase-like 39 405 IPR011050 -
Mal5g4028 411 PANTHER PECTATE LYASE 18-RELATED 10 408 IPR045032 GO:0030570
Mal5g4028 411 PRINTS Pollen allergen Amb family signature 208 229 IPR018082 -
Mal5g4028 411 PRINTS Pollen allergen Amb family signature 288 307 IPR018082 -
Mal5g4028 411 PRINTS Pollen allergen Amb family signature 144 160 IPR018082 -
Mal5g4028 411 PRINTS Pollen allergen Amb family signature 352 376 IPR018082 -
Mal5g4028 411 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Mal5g4028 411 PRINTS Pollen allergen Amb family signature 84 101 IPR018082 -
Mal5g4028 411 PRINTS Pollen allergen Amb family signature 108 133 IPR018082 -
Mal5g4028 411 PRINTS Pollen allergen Amb family signature 382 405 IPR018082 -
Mal5g4028 411 SMART amb_all 136 333 IPR002022 -
Mal5g4028 411 Pfam Pectate lyase 145 327 IPR002022 -
Mal5g4028 411 PANTHER PECTATE LYASE 10 408 - -
Mal5g4028 411 Gene3D - 61 404 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4028 Mal-Chr5 110042463 110044244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4028 3 411 Polysaccharide Lyase AT5G63180 80.779 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4028 K01728 - gmx:100101868 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4028 5 110042463 110044244 Mal2g2467 2 31158754 31161061 ECH
Mal1g0293 1 3236383 3244587 Mal5g4028 5 110042463 110044244 ECH
Mal5g4028 5 110042463 110044244 Mal5g4028 5 110042463 110044244 ECH