Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4025 ATGGATGGTAGGAGGCATTCTGTTGATGTGCCTATTTCTAAGACTCTTGTAGCATTAAGGAGAGTTAGGTCATTGAGGGATCCTTCAACAAATGGTATTAGCAAACTCTCTCCTTTGATTGATAATGTGCATTGGGAAAAGGGGATTTCTCTGAGGTTTCTTAATGCTTCTTATGCATGTGATTATGATGATAATGGTTATTTAAGGGCAAAGGATTTAGATTTTAAGGGTCATAGAGAACATGGTAGTACTACTAAGTTTGAAATGAATGGTCACATGATGAACTATTGTGAGGAACATCAACAAGATGGTGAATTTGTTTACTCTAATCCTAAGCAGCAAGGTAGTTTTGGAAATAAATCGCCAAAAGAAAGTTGTTGTAGCAACCATGAAGCCGTAGGATTGGATTTGACTTCAATTGTTCCTTCTAGTAATCATTTGAAGGATGAAGAATCATGCTATTTATCAACTGTCTTGTCATCACAATTAGGGAGAATAGATTGCACAAAGTCAACTAGAAAATTGCTGCATAAGAATCAAGCGAAACCGTTTGAATTGGTGCGCGATAATGCAAGCAGTGTTGAGAGTCCATGCCTTAGTGCCTCAACACACACACCTCAAGATGTTGATGTTTTAGTTGATTACAATGGATGTGGAATAAGCTGCTGTTGGTCGAAGTCACCAAGGTTTAGAGACGCAAATTATTATTCTGAAATGGAAGACCTTCCCTTGATGTTGCAGCATGTCAATGAGACTGGTCTTCATGGACATAAAAGCATGAGACACATTATTGGTAGTGAAATTAGTCCAACATTGGAAACTCCTAGAAGTTTATCTATGAAATTTAGGCCAAAATCTTTCAATGATTTGGTTGGACAAAATATGGTTGGTAAGTCTCTTTTGGGTGCAATCTCTAGAGGAAGGATAGCATCATTTTATCTATTTCATGGTCCTCGCGGCACGGGAAAGACCTCTGCATCGAGGATATTCGCTGCTGCACTGAATTGCCTCTCGCACGAGGAGCAAAGGCCTTGTGGTTTGTGTAGAGAATGTGTTTTGTTCTATTCTGGAAGAAGTAAAGATGTTAAGGAAGTCGACTCTTTGAGAATTAATCGTTCGGACAAGGCTAAATCCCTTGTTAAGAATGCATGCACAACAGCTCCAGTTTCTTCGTGTTATAAGGTGTTCATTATTGATGAGTGCCAGTTATTGAATAAGGAAACATGGGTGACTCTTTTGAATAGCCTAGGGAGTGTTTCTCAACATGTGGTTTTTGTGATGATCACTCCTGATTTGGAGAAGCTTCCACGAAGTGCGGTTTCTCGAGCGCAGAGGTATCACTTTACAAAGATTAAAGATGCCGACATTGCTAGCAGACTAAAAAGAATTTGTGTTGAAGAAGGTCTTGAGTCAGAACAAGATGCTTTGGATTTCATTGCTGCTAAATCATGTGGTTCTCTTAGGGATGCAGAAATGATGCTTGATCAGCTAAGTTTGCTTGGTAAAAAAATCACAATTTCCTTAGTCTATGAGCTTACCGGAGTCATTTCTGACGATGAATTGCTTGATTTGCTGGACCTGTCTCTGTCATCCGACACTTCAAATACGGTTATAAGAGCCCGGGAGCTGTTGAGATCAAGAATAGATCCTTTACAGCTTATATCTCAGCTGGCGAATCTTATTATGGACATTCTTGCAGGGAAATGTGATCTTGGTGGTTCTGAAATCAGAAGAAGATTTTCTGATAGACACATTTCGGAATCAAGCATGCAGAAACTTAATCATGCATTAAGAATACTTTCCGAAACAGAGAAGCAATTGAGAATTTCTAAGAATCAAACAACATGGTTCACTGCAGCTCTTCTACAGTTAAGCTCTATTGAATATTCATCTGTTGATGCCAATGATACTAAGTTGTGTATCAGTGCTGCATCCAATAGAGATGGTGATTTATGCAGTACATCATCTACAGGTGAAAATTTGAAGCATCTTGTTACAGGTAATTGTGATGAGAAATCAAATAAAATAGCAGTGCAGGAGGATGATAAAGCCACATTGGATTGTATATGGTATAAAGCTACAGAGATATGTCAATCTAAAAGGCTCAAGGCTTTTCTCAGGAAGCAAGGGAAGTTGTCTTCAGTTTGTATTAATCAAGGTCTTGCAGTTGTGGAGTTAGAGTTCCACCACCGTGTCTACGTAGCTAGAGCTGAGAAGTCATGGAAACAAATTGCAAGTTCCCTACAGTTCATATTGGGTTGCAACATTGAGCTCAGAATCAATCATGTACCTTGTACTACAGATTCTAAGTATGCTAAGTTGAAGAGGTCATCTTTCAATTTCTTCAATTGTTCGCGCAGAATTCTTCGTAAATCATTATCATCCGATGAACAAGGATGTGAATCAGACTATGCTGATTGCACTTCACAAAAGCCTATGATGATGGACCGAACTCTATCTCGCTCCTCTGATTGTGGATCCCTGGTACCTCCCCTTGAGTCCTACCATGGAATGGAGCTTGTAACAACTCTTAGAAGCTGTGAAGGGAATTTGCTAAGCTCGGGGAAAATAGTTTCGAATAGGATAGATCAAGAGACTCCGAGGTTTTCGTATTCTAGAGATGATTCTGTCAAGGAAGAAGGGTGCAATTATGAAGATCTTGCATCATCAACCGTTGATTTAGAAAATACTCATTCTAACTGTTTTCCTCGAACGCTCTGGCTTCATAAAAAATTATCTTCTTCATATGTATCAAAACAGAAGGATTTTAGTTTTATCCATCCCCAAGTTCAAATGTTCTGA 2802 0.3901 MDGRRHSVDVPISKTLVALRRVRSLRDPSTNGISKLSPLIDNVHWEKGISLRFLNASYACDYDDNGYLRAKDLDFKGHREHGSTTKFEMNGHMMNYCEEHQQDGEFVYSNPKQQGSFGNKSPKESCCSNHEAVGLDLTSIVPSSNHLKDEESCYLSTVLSSQLGRIDCTKSTRKLLHKNQAKPFELVRDNASSVESPCLSASTHTPQDVDVLVDYNGCGISCCWSKSPRFRDANYYSEMEDLPLMLQHVNETGLHGHKSMRHIIGSEISPTLETPRSLSMKFRPKSFNDLVGQNMVGKSLLGAISRGRIASFYLFHGPRGTGKTSASRIFAAALNCLSHEEQRPCGLCRECVLFYSGRSKDVKEVDSLRINRSDKAKSLVKNACTTAPVSSCYKVFIIDECQLLNKETWVTLLNSLGSVSQHVVFVMITPDLEKLPRSAVSRAQRYHFTKIKDADIASRLKRICVEEGLESEQDALDFIAAKSCGSLRDAEMMLDQLSLLGKKITISLVYELTGVISDDELLDLLDLSLSSDTSNTVIRARELLRSRIDPLQLISQLANLIMDILAGKCDLGGSEIRRRFSDRHISESSMQKLNHALRILSETEKQLRISKNQTTWFTAALLQLSSIEYSSVDANDTKLCISAASNRDGDLCSTSSTGENLKHLVTGNCDEKSNKIAVQEDDKATLDCIWYKATEICQSKRLKAFLRKQGKLSSVCINQGLAVVELEFHHRVYVARAEKSWKQIASSLQFILGCNIELRINHVPCTTDSKYAKLKRSSFNFFNCSRRILRKSLSSDEQGCESDYADCTSQKPMMMDRTLSRSSDCGSLVPPLESYHGMELVTTLRSCEGNLLSSGKIVSNRIDQETPRFSYSRDDSVKEEGCNYEDLASSTVDLENTHSNCFPRTLWLHKKLSSSYVSKQKDFSFIHPQVQMF* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4025 933 CDD AAA 291 442 - -
Mal5g4025 933 Gene3D - 271 449 IPR027417 -
Mal5g4025 933 Gene3D - 452 513 - -
Mal5g4025 933 CDD HLD_clamp_pol_III_gamma_tau 451 514 IPR045085 -
Mal5g4025 933 Pfam DNA polymerase III, delta subunit 293 451 - -
Mal5g4025 933 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 113 897 - -
Mal5g4025 933 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 279 501 IPR027417 -
Mal5g4025 933 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 277 624 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Mal5g4025 933 SUPERFAMILY post-AAA+ oligomerization domain-like 521 622 IPR008921 GO:0003677|GO:0006260
Mal5g4025 933 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 113 897 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4025 Mal-Chr5 109976031 109979567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4025 268 576 Core DNA Replication Machinery Family AT1G21690 21.865 1.17e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4025 - - pvu:PHAVU_003G207500g 1244.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4025 5 109976031 109979567 Mal5g4025 5 109976031 109979567 ECH
Mal5g4025 5 109976031 109979567 Mal2g2472 2 31262003 31265590 PCT