Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4023 ATGTCAAGTTCAGAAGAGATTTTCCCATGGCTAAAATCACTTCCAGTAGCACCAGAATATCGACCAACTTTAGCAGAGTTTCAAGATCCAATCGGTTACATTTTCAAGATTGAAAAAGAAGCATCACAATACGGTATCTGCAAGATCATTCCACCTCTTTCATCTTCTTCTAAAAAAACCGTTATTGCTAACATGAACCGGTCTCAACCCCGGTTCACAACTCGTCAACAGCAGATCGGGTTCTGTCCACGGAAGCCTCAACCGGTTCGAAGACCAGTCTGGCATAGTGGTCTACACTACACGTTTCGTGAATTCGAAGCTAAAGCGAAGTTGTTTGAGAAAAGTTTCTTCAAAAAAGTGAAGAAAAAAGCTCAACTTTCTGCGCTTGAAGTTGAGAGTTTGTACTGGAAAGCTACTTCTGATAAACCTTTTTCTGTTGAGTATGCAAACGACATGCCTGGTTCTGCGTTTTGTGAAGTGAATGAGGGTGGTTATGGTGTTGAAACGGTGGGGGATAGTGGTTGGAATATGAGACAGGTTTCGAGGGCAAATGGGTCATTGTTGAAGTTTATGAAGGAAGAGATAGGTGGTGTTAGTTGTCCTATGGTTTATGTTGCTATGTTGTTTAGTTGGTTTGCTTGGCATGTTGAGGATCATGATTTGCATAGTTTGAATTATCTTCATTTGGGTGCTTCTAAGACTTGGTATGGTGTTCCTAGAGATGCTGCTGTTGCTTTTGAGGAAGTTGTTCGAGTTCATGGTTATGGCGGAGAGATTAATCCTCTTGTTACTTTTGCTATTCTTGGGGAGAAAACTACAGTGATGTCCCCTGAAGTATTCGTTCGTGCAGGTGTTCCATGCTGCAGGTTGGTGCAAAATGCTGGGGAATTTGTTGTGACATTTCCGAGAGCCTATCACACAGGATTCAATCATGGTTTTAATTGTGGAGAGGCAGCTAACATTGCAACACCTGAATGGTTGAGGGTTGCTAAAGATGCTGCTATTCGTAGGGCTTCAATTAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGGCCTTGCTTTGTGTTCTAGAATCCCTGGAGACATCAGTGTTGGACCACGGAGTTCTCGACTTAAAGATAAGAAGAAGGGTGTAGGACAAACTGTAATTAAAGAACTATTTGCACAGGATGTGATACAGAATAATGATCTGCTGCATGCACTCAGCAAAGGATCCTCTGTAGTGCTTCTTCCTCGCAGCTCTTCTGACTTCTCTGTTTGCTCAAAACTACGTGTTGGATCTCAACAACTAAAGGTTAACACTGAGTTTTCTCTCGATGTGTGCAATTCTGAGGGAATGAGTTCCTCAAAAAGTTTCATTTCAGATGATCTAATGTTCAACAGGAGTCATGGAATCAAAAAAGTAAAAGGTTTTTCTTCTGTAAAAGAAAAGTTCGCCACGTTGTGTGAAAGGAACAGGGTTTGTTCATCCAATGTGAATGGTGACATATGCACTTCAAGTTCAAAAACACTGCAAAGAGACACCAAAAAAGATACAAGTCAAGGAGATGGGTTATCAGACCAGAGACTATTCTCATGTGTGACATGTGGAATATTATGTTTTTCCTGTGTTGCTATTGTACAGCCTAAAGAGCCAGCAGCTAGATACCTTATTTCAGCTGATTGTAGCTTCTTTAATGATTGGATAGTTGGTTCTGGAGTAACTAGAAATAAGTTTACTATTGACCAAGAAGATGCAAATATTCCCAAGCAGAGTACATATACAGGATGGACAAAACAGAATGCCAGCGATGATTTATATGATGTTCCTATTGAATCTGTTGAACAACAGAATGCCAGCGGTGATTTATATGATGTTCCTGTTGAATCTGTTGAACAACAGACACAAATTGCTGACCAAAATTATATGGAAGCTTCAAGTATTGAAAGAGAAAAAGGCAACACAGCTCTTGCATTGTTGGCTACAGCATATGGAAATTCATCCGACTCCGAGGACGATCAAGGTGACTCAGATATTGCAGTTGATGGTGATGATTTGAACACAATGAAGCATCCATCAGAAAGTAAATCCCAGGAGATACGTTGTTTTCCTTCTCAGTTTCAAGATTGCAATGCTAGCCCAGTAGATATTATTGGCAATTATGAGAATTATATGCATAAGAAAGTTGAGCGCATTATGAGTCCTTTTGATTACTCTGTTCCCTTGTTGGGCAAGACTGTGATTCCCATTGAGAATAAAAATGTATTGTTTGTGCCACCATCTGATGAAGACTCATCTAGGATGCATGTCTTCTGTCTAGAGCATGCTGCAGAAGCAGAGAAGCAACTTCAGCCAATTGGAGGAGCGCATGTATTGCTCCTATGTCATCCAGATTATCCAAAGATTGAGGCTGAAGCGAAGTTTGTGGCTGAAGAAATGGGGATTGATTATGAGTGGAAGAATACTGTATTCAGGCCTGCCAACAGGGAAGATGAGACGAGGATCCAATCAGCTCTGGATAGTGAGGAAGCTATTCCTGGCAATGGTGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTATAGTGCCAATCTTAGCCGGTCTCCACTTTACAGTAAGCAAATGCCTTACAATTCTGTTCTGAATTATGCATTTGGTCGTAGCTCTTCAGTAAGCTCGTCCATTGAGCCCAAGTTCTATCAGAGAAGGGCAAACAGGAAGAAAAAGGTAGTTGCTGGGAAGTGGTGTGGCAAAGTTTGGATGTCCAATCAGGTCCATCCCTTTTTAGTAAAAAGAGAGCTTGAAGATGTTGAGAATGAGAAAAGTGAGAGATCAGAACGTACACACAAAAGCAATACTACTACGAATAGAAAATCCGGTAGGAAAAGGAAAATGAACGTAGAGAGTGAAGGAACTTGGGAAGGAAGTTTTACCGAGGGGGATTGGCTTTCTGATAATTCAATTGAAGATAAATACAATCAATCTCGACGGAGGAATGTTGCAAGTAAGCAAATCAGGCATACTGAGAGAGATGGTACTACTTCAGAAGGGGGTTATTCTCCTTTGCAGCATCATAAAAAGCATACGAGCGAGCATCCTAAATACATGGAAAGTGATGCAGTTTCAGATGATTCGCTCGATGATAATAATACTCGCATACAGAAATACATGGAAAGTGATGCAGTTTCAGATGATTCGCTCGATGATAATACTCGCATACAGCCTTGGAGGATGGCTATTGCCAAGGAAGCTAAATCTATTGAAAGTGATATGGTTTCAGATGATACAATGGACTATGAATCTGATTGGCCACGTACGGGAGAGCTTAGTGACAAGCAAGATGCTATTTCAGAGGATTCGTTGGATGTTGGTTCTCTTCAGAGGCATAGGAGGACTCCCAAAAGCAAGCATGACCAATACATTGCTGAAGATGTTATTTCTGATGACCAAATCAAGGTTTATTTTCAGAAGCAGAAGCGTGAGATGTCTAAAAGTAGACAACAGCAATATTTTTCTGAAGAAGATGCAGTGATATCTGACGACCAACTGGAGCACCGCATGCTGAAACAACAAAGGAGGAATCCTAAAAGCAGACAAGACAATTATATTGCTGAAGAGGATATTATATCTGATGACGTACCTGAATGCCATTCTCACAAGTATCAAAGAAAGATTCCAAAAGACAAGCAAGCCAAACATGTCATGGAGGAAGATGTAACATGTGATGACCAGTTGGAGGGTCACTTTCAGAAGCCCCGGAGGAGTGCTCGAAGGAGCAAGAAAAATAAATATAGTGATGAAGAAGTTAGGGATGACTCAGCTGAAAATAATTCTCACATGCTGCATAGAACTTCTAAAAGGAAGCAAGCTAACTGCACAGATGAAGATGATATAAACTCAGATGATCAGATGGAGCGTGATTGTCATCAACAATACAGGAGACCTCTTCGAAGTAAGAAAACCAAATCAAAAACTCTTCAACAAATGAAACAAGCAAACTCGGTGTGTGTGAAAAGCAAGACATCTCGGCCTGTAAAATCCAAGGCTCCTCGGAAAATGAAGCAGCAGCCTCGTGTGTGGAACAATCAATCAGGTAACTCCAAAGACGAGACTTCACAAATTGAAGACGATGAAGCCGGAGGATCTCTCAGCACACGTCTCAGGAAGAGAGTCCCGAAAATTCAGAATGAATCTGATGGAAAAACAAAAGAAAAGGAAAACAAAAAGAAAAAAGTGAAGAATGCAATAACTGCAAAGGTTTCAGCTGGCCGTGCCAAAGTGAAGGATGAGGAAGAAGAATACCAGTGTGACATTGAGGGGTGCACCATGAGTTTTGAGTCAAAACAGGAGCTAACACATCATAAGAGAAATATCTGTCCTGTGAAAGGGTGCGGAAAGAAGTTTTTCTCGCACAAATATCTAGTGCAACACCGACGAGTTCATGAGGACAACCGGCCACTAAAGTGCCCTTGGAAGGGATGCAAGATGAGTTTCAAGTGGGCATGGGCTCGTACCGAACATATTCGAGTCCACACTGGTGTTCGTCCATATGTGTGTGCTGAGCCAGGGTGTGGGCAAACATTCAGGTTTGTTTCTGATTTCAGTCGTCATAAGCGAAAAACTGGTCATTCGGTAAAGAAGACTCGTTAA 4644 0.4134 MSSSEEIFPWLKSLPVAPEYRPTLAEFQDPIGYIFKIEKEASQYGICKIIPPLSSSSKKTVIANMNRSQPRFTTRQQQIGFCPRKPQPVRRPVWHSGLHYTFREFEAKAKLFEKSFFKKVKKKAQLSALEVESLYWKATSDKPFSVEYANDMPGSAFCEVNEGGYGVETVGDSGWNMRQVSRANGSLLKFMKEEIGGVSCPMVYVAMLFSWFAWHVEDHDLHSLNYLHLGASKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFVRAGVPCCRLVQNAGEFVVTFPRAYHTGFNHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLGLALCSRIPGDISVGPRSSRLKDKKKGVGQTVIKELFAQDVIQNNDLLHALSKGSSVVLLPRSSSDFSVCSKLRVGSQQLKVNTEFSLDVCNSEGMSSSKSFISDDLMFNRSHGIKKVKGFSSVKEKFATLCERNRVCSSNVNGDICTSSSKTLQRDTKKDTSQGDGLSDQRLFSCVTCGILCFSCVAIVQPKEPAARYLISADCSFFNDWIVGSGVTRNKFTIDQEDANIPKQSTYTGWTKQNASDDLYDVPIESVEQQNASGDLYDVPVESVEQQTQIADQNYMEASSIEREKGNTALALLATAYGNSSDSEDDQGDSDIAVDGDDLNTMKHPSESKSQEIRCFPSQFQDCNASPVDIIGNYENYMHKKVERIMSPFDYSVPLLGKTVIPIENKNVLFVPPSDEDSSRMHVFCLEHAAEAEKQLQPIGGAHVLLLCHPDYPKIEAEAKFVAEEMGIDYEWKNTVFRPANREDETRIQSALDSEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVLNYAFGRSSSVSSSIEPKFYQRRANRKKKVVAGKWCGKVWMSNQVHPFLVKRELEDVENEKSERSERTHKSNTTTNRKSGRKRKMNVESEGTWEGSFTEGDWLSDNSIEDKYNQSRRRNVASKQIRHTERDGTTSEGGYSPLQHHKKHTSEHPKYMESDAVSDDSLDDNNTRIQKYMESDAVSDDSLDDNTRIQPWRMAIAKEAKSIESDMVSDDTMDYESDWPRTGELSDKQDAISEDSLDVGSLQRHRRTPKSKHDQYIAEDVISDDQIKVYFQKQKREMSKSRQQQYFSEEDAVISDDQLEHRMLKQQRRNPKSRQDNYIAEEDIISDDVPECHSHKYQRKIPKDKQAKHVMEEDVTCDDQLEGHFQKPRRSARRSKKNKYSDEEVRDDSAENNSHMLHRTSKRKQANCTDEDDINSDDQMERDCHQQYRRPLRSKKTKSKTLQQMKQANSVCVKSKTSRPVKSKAPRKMKQQPRVWNNQSGNSKDETSQIEDDEAGGSLSTRLRKRVPKIQNESDGKTKEKENKKKKVKNAITAKVSAGRAKVKDEEEEYQCDIEGCTMSFESKQELTHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDNRPLKCPWKGCKMSFKWAWARTEHIRVHTGVRPYVCAEPGCGQTFRFVSDFSRHKRKTGHSVKKTR* 1548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4023 1547 ProSiteProfiles Zinc finger C2H2 type domain profile. 1485 1514 IPR013087 -
Mal5g4023 1547 MobiDBLite consensus disorder prediction 681 695 - -
Mal5g4023 1547 Pfam JmjC domain, hydroxylase 202 320 IPR003347 -
Mal5g4023 1547 ProSitePatterns Zinc finger C2H2 type domain signature. 1457 1479 IPR013087 -
Mal5g4023 1547 SUPERFAMILY beta-beta-alpha zinc fingers 1453 1491 IPR036236 -
Mal5g4023 1547 SMART JmjN_1 16 57 IPR003349 -
Mal5g4023 1547 MobiDBLite consensus disorder prediction 1184 1411 - -
Mal5g4023 1547 MobiDBLite consensus disorder prediction 1019 1043 - -
Mal5g4023 1547 SUPERFAMILY Clavaminate synthase-like 185 338 - -
Mal5g4023 1547 ProSiteProfiles Zinc finger C2H2 type domain profile. 1455 1484 IPR013087 -
Mal5g4023 1547 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 4 1538 - -
Mal5g4023 1547 ProSiteProfiles Zinc finger C2H2 type domain profile. 1515 1546 IPR013087 -
Mal5g4023 1547 ProSitePatterns Zinc finger C2H2 type domain signature. 1517 1541 IPR013087 -
Mal5g4023 1547 ProSiteProfiles JmjN domain profile. 17 58 IPR003349 -
Mal5g4023 1547 SUPERFAMILY beta-beta-alpha zinc fingers 1495 1539 IPR036236 -
Mal5g4023 1547 SMART cupin_9 169 338 IPR003347 -
Mal5g4023 1547 MobiDBLite consensus disorder prediction 1184 1250 - -
Mal5g4023 1547 MobiDBLite consensus disorder prediction 991 1043 - -
Mal5g4023 1547 PANTHER LYSINE-SPECIFIC DEMETHYLASE 4 1538 - -
Mal5g4023 1547 ProSiteProfiles JmjC domain profile. 169 338 IPR003347 -
Mal5g4023 1547 MobiDBLite consensus disorder prediction 1323 1339 - -
Mal5g4023 1547 SMART c2h2final6 1515 1541 IPR013087 -
Mal5g4023 1547 SMART c2h2final6 1455 1479 IPR013087 -
Mal5g4023 1547 SMART c2h2final6 1432 1454 IPR013087 -
Mal5g4023 1547 SMART c2h2final6 1485 1509 IPR013087 -
Mal5g4023 1547 MobiDBLite consensus disorder prediction 1093 1141 - -
Mal5g4023 1547 MobiDBLite consensus disorder prediction 934 970 - -
Mal5g4023 1547 ProSitePatterns Zinc finger C2H2 type domain signature. 1487 1509 IPR013087 -
Mal5g4023 1547 MobiDBLite consensus disorder prediction 1388 1411 - -
Mal5g4023 1547 Pfam jmjN domain 18 51 IPR003349 -
Mal5g4023 1547 MobiDBLite consensus disorder prediction 1258 1293 - -
Mal5g4023 1547 MobiDBLite consensus disorder prediction 991 1011 - -
Mal5g4023 1547 Gene3D Cupin 10 342 - -
Mal5g4023 1547 MobiDBLite consensus disorder prediction 664 696 - -
Mal5g4023 1547 MobiDBLite consensus disorder prediction 1093 1127 - -
Mal5g4023 1547 MobiDBLite consensus disorder prediction 934 951 - -
Mal5g4023 1547 Gene3D Classic Zinc Finger 1453 1539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4023 Mal-Chr5 109949757 109956736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4023 1382 1546 C2H2 Transcription Factor Family AT3G48430 66.667 8.84e-65 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal5g4023 JmjC 1.5e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4023 - - gmx:100775813 1858.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4023 5 109949757 109956736 Mal6g1120 6 17000959 17003147 PCT
Mal2g2477 2 31300726 31310221 Mal5g4023 5 109949757 109956736 PCT