Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4020 ATGGAACACTCTGAAATCGATTTAGCTGCTACTGTTTCCAACGCCCAGGAAGAAGATTCTTCTTCTTCTTCTTCCCCAGTTGATCATCATTCTCCACCGTCAGATCTCAATCCAACAGTTGAGAAGGAGGAAGATGGTGATGAACTCGCTGTGGAGCTTCATGAGAAGTTGGATTTGAAGGTTGAAGATGAAAGGGTTGCTGAAGCTGATGATAAAGTTTCGAACTTTAACGACGGTGGAGTAGTTTCTGATGAAAGGGGTGCTGAAACTGATGATAAAGTTTCCAACTTTAACGATGGTGGAGTAGTTTGTGATGAAAGGGGTGCTGAAACTGATGATAAAGTTTTGAACTTTGATGATGGTGAGCGAGTTGGTGATGAAAAATCTGTAAAGGGTGAAAATGAAGATGAAGAAAAATCTGTTAAGGGTGGAAATGAAGAGTCTATTAAGGGTGAAAAAGAAGAATTTGTTAAGGGTGAAGAAGGGGTTGTTGATGGAGATAGCAAAGGTTGGGATACTAATAGTTGGAATGAGAATGTGAATGAAGAGCTTGGTGGTGGTAGAGATGCTGATGGTTGGGGTTATGGTGATGGTGGTGGTTATGGTGATGGTGGTGGTTATGGTGATGGTTATGGCTATGGTGATGGAGATGAAAAGAATGAAGAGAGAAGTGGTGATGGAACTCACCAGTTCCCTTTGAGGCCTGAAGCTGAAGATTGTTCATTTTATATGAAGACTGGGAGTTGCAAGTTTGGATTCAACTGCAAATTTAATCACCCCCTTAGGAGGAAAAACCAAAACCAGGCTGTTAGGGAGAAGGTGCGAGAAAGAGAAGAACCGGCAGAAAACCCAGGCCAGACAGAATGCAAGTATTATCAAAGGTCTGGGGGTTGTAAGTTTGGAAAAGCTTGCAAGTTCAACCACACAAAAGGGTTCACAGCACCAATTTCAGAACTTAACTTTCTTGGCTTACCTATTCGTCTGGGGGAGAGAGAGTGCCCCTATTACATGCGCACTGGCTCTTGTAAGTTTGGATCGAACTGTAGGTTCAATCATCCCGATCCTACAACTGTCGGAGGATCTGATCCTCAATCAGGGTATGGTAATGGAGGGTCCGTTTCACTACGAGGTGTATCACAACAACCTGTCTCCTCATGGTCTCCTTCAAGAAAGTTAAATGAAACACCTTTTGCGCCATTGATGGCTACACCTACTCAAGGACTTGCTCCCCAAACTTCTGATTGGAAAGGATATCAGGCACCTGTCTACATATCCGAGAGGATCGTGCATCCATCTTCTACATATGTCATGAACAACCCAACAGTTGATGCAAATGTTTACATGCACCATCAAAAGCAGATGCCATTTGAAGTGTTTCCAGAAAGGCCCGGTGAACCTGAGTGCACCTTCTTCTTAAAAACTGGGGATTGCAAGTTCAAATCTAACTGTAAATTTCACCATCCAAAGAATCGGGTTGCAAAATTGCCTCCTTGCAACCTTAGTGACAAGGGTCTGCCTTTGAGACCTGACCAGAGTGTCTGCTCGCACTATAGTCGTTATGGAATTTGCAAATTTGGACCAGCTTGTAGATTCGACCACCCAGAAAGCGCACTTCCCTTAATGATGCCTGGACTCGGCCAGCAATCGTATGCAAACTCGGCTAATGCTCAGGTGGATGGGATGGGTGCAAGTGATGTGACAGTTCAGCAATCTGTCTAA 1719 0.4398 MEHSEIDLAATVSNAQEEDSSSSSSPVDHHSPPSDLNPTVEKEEDGDELAVELHEKLDLKVEDERVAEADDKVSNFNDGGVVSDERGAETDDKVSNFNDGGVVCDERGAETDDKVLNFDDGERVGDEKSVKGENEDEEKSVKGGNEESIKGEKEEFVKGEEGVVDGDSKGWDTNSWNENVNEELGGGRDADGWGYGDGGGYGDGGGYGDGYGYGDGDEKNEERSGDGTHQFPLRPEAEDCSFYMKTGSCKFGFNCKFNHPLRRKNQNQAVREKVREREEPAENPGQTECKYYQRSGGCKFGKACKFNHTKGFTAPISELNFLGLPIRLGERECPYYMRTGSCKFGSNCRFNHPDPTTVGGSDPQSGYGNGGSVSLRGVSQQPVSSWSPSRKLNETPFAPLMATPTQGLAPQTSDWKGYQAPVYISERIVHPSSTYVMNNPTVDANVYMHHQKQMPFEVFPERPGEPECTFFLKTGDCKFKSNCKFHHPKNRVAKLPPCNLSDKGLPLRPDQSVCSHYSRYGICKFGPACRFDHPESALPLMMPGLGQQSYANSANAQVDGMGASDVTVQQSV* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4020 572 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 329 353 IPR000571 GO:0046872
Mal5g4020 572 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 464 489 IPR000571 GO:0046872
Mal5g4020 572 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 285 308 IPR000571 GO:0046872
Mal5g4020 572 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 238 260 IPR000571 GO:0046872
Mal5g4020 572 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 510 535 IPR000571 GO:0046872
Mal5g4020 572 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 4 572 - -
Mal5g4020 572 MobiDBLite consensus disorder prediction 65 197 - -
Mal5g4020 572 SUPERFAMILY CCCH zinc finger 509 538 IPR036855 GO:0046872
Mal5g4020 572 Gene3D - 214 272 - -
Mal5g4020 572 MobiDBLite consensus disorder prediction 1 48 - -
Mal5g4020 572 MobiDBLite consensus disorder prediction 209 232 - -
Mal5g4020 572 ProSiteProfiles Zinc finger C3H1-type profile. 234 262 IPR000571 GO:0046872
Mal5g4020 572 ProSiteProfiles Zinc finger C3H1-type profile. 508 536 IPR000571 GO:0046872
Mal5g4020 572 ProSiteProfiles Zinc finger C3H1-type profile. 327 355 IPR000571 GO:0046872
Mal5g4020 572 Gene3D - 278 361 - -
Mal5g4020 572 Gene3D - 460 540 - -
Mal5g4020 572 MobiDBLite consensus disorder prediction 9 32 - -
Mal5g4020 572 MobiDBLite consensus disorder prediction 214 232 - -
Mal5g4020 572 SUPERFAMILY CCCH zinc finger 235 262 IPR036855 GO:0046872
Mal5g4020 572 SUPERFAMILY CCCH zinc finger 466 491 IPR036855 GO:0046872
Mal5g4020 572 MobiDBLite consensus disorder prediction 105 167 - -
Mal5g4020 572 ProSiteProfiles Zinc finger C3H1-type profile. 462 490 IPR000571 GO:0046872
Mal5g4020 572 PANTHER PROTEIN PHOSPHATASE RELATED 4 572 - -
Mal5g4020 572 SMART c3hfinal6 462 489 IPR000571 GO:0046872
Mal5g4020 572 SMART c3hfinal6 283 310 IPR000571 GO:0046872
Mal5g4020 572 SMART c3hfinal6 327 354 IPR000571 GO:0046872
Mal5g4020 572 SMART c3hfinal6 234 261 IPR000571 GO:0046872
Mal5g4020 572 SMART c3hfinal6 508 535 IPR000571 GO:0046872
Mal5g4020 572 SUPERFAMILY CCCH zinc finger 328 354 IPR036855 GO:0046872
Mal5g4020 572 MobiDBLite consensus disorder prediction 355 390 - -
Mal5g4020 572 SUPERFAMILY CCCH zinc finger 287 310 IPR036855 GO:0046872
Mal5g4020 572 ProSiteProfiles Zinc finger C3H1-type profile. 283 311 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4020 Mal-Chr5 109931550 109935086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4020 459 553 C2H2 Transcription Factor Family AT3G02830 46.875 5.07e-22 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal5g4020 zf-CCCH 2e-08 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4020 5 109931550 109935086 Mal2g2478 2 31321637 31325665 ECH
Mal5g4020 5 109931550 109935086 Mal5g4020 5 109931550 109935086 ECH
Mal5g4020 5 109931550 109935086 Mal2g2478 2 31321637 31325665 PCT