Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4008 ATGGGACAACTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGCGAAATTGAAGCTGCAAGGGCTTATGACAAAGCAGCTCTAAAATGCAATGGAAGAGAGGCTGTGACTAACTTTGAGCCAAGTACATATGAAAATGAGATGAAAGAAGAAGCTATTAATGAAGGTAGCAGTCACAATCTTGACCTTAATTTGGGAATGGCGACTCCAGGACATGAACCCAAAGAAAACAGAGGATATCGTCAATTACAGACCGTCCCTTCTTCCAACCTGCATCCTGAAAGGAATTTAAAGGCGACATCAATGGCTTCTATATTGAAGAGGTGTTGTTGTGCTGCATGTATAAACTGA 357 0.409 MGQLLGKKYIYLGLFDSEIEAARAYDKAALKCNGREAVTNFEPSTYENEMKEEAINEGSSHNLDLNLGMATPGHEPKENRGYRQLQTVPSSNLHPERNLKATSMASILKRCCCAACIN* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4008 118 CDD AP2 1 44 IPR001471 GO:0003700|GO:0006355
Mal5g4008 118 Gene3D AP2/ERF domain 3 43 IPR036955 GO:0003700|GO:0006355
Mal5g4008 118 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 92 - -
Mal5g4008 118 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 92 - -
Mal5g4008 118 ProSiteProfiles AP2/ERF domain profile. 1 42 IPR001471 GO:0003700|GO:0006355
Mal5g4008 118 SUPERFAMILY DNA-binding domain 5 43 IPR016177 GO:0003677
Mal5g4008 118 SMART rav1_2 2 48 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4008 Mal-Chr5 109774545 109777677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4008 1 80 AP2-EREBP Transcription Factor Family AT4G36920 58.333 6.16e-27 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4008 K09284 - gmx:100777102 165.622