Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3970 ATGGCGACGACGGATCCGACGCCGTTAATCGGAAGTTCATCCGACGAATCGAACTCCGGACGGAGAATTCTCCGCGCGCCGAGTCTCCGGCAAGCAGCGCGGTTTCTACGACAAGCCAGCGGGCGGAGGTTGATGCGTGAGCCCTCGATGATGGTGAGGGAAACAGCGGCGGAGCAATTGGAAGAACGGCAAAGCGATTGGGCTTATTCAAAGCCGGTGGTGATTCTTGATATTGTGTGGAATTTCTTGTTTATTATTGCGGCGGGTACTGTGTTGATTTTGAGTCGGAATGAGTCTCCTAGCTCGCCGCTTAGGTTGTGGATTGTAGGGTATGCGTTGCAGTGTGTGCTTCATGTTGTGTGTGTTTGTTTTGAGTATCGGAGACGGATGCGGATGCGGGTGAATAACCATGGTGGTAATGTGGTTGGGGGTGGTGGTAGTGGTGATTTGAGCTTTGATTCAATGGATAGTTCTGGACAGTATGGGGATGATGGTTCTACAAGTATGGCAAAGCATTTGGAATCAGCCAACACAATGTTTTCTTTTATTTGGTGGGTCATTGGATTCTATTGGGTATCAGCTGATGGTCAAGATTTGATCCATGATTCTCCTAAGCTTTACTGGTTAAGTATTGTCTTCTTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTATTGCGCTGGCATGCATCATTGGTATTGCTGTTTGCTGTTGTCTTCCATGCATCATTGCACTTCTGTATGCAGTTGCAGACCAGGCAAGGGCAACAAAAGAAGACATTGAGCAGTTGTCAAAATTCAAATTCCAAAGAAAAAGTCAGGAGAAGCTTGCTGGTAATACACAAGGACCTGTTGGAGGAATAATGATCGAATGTCAAGCTGATTCCCCAATTGAACACGTGCTTGCCGATGAGGATGCGGAGTGTTGCATCTGCCTTTCTGCCTATGATGACGGGGTTGAACTAAGACAACTTCCTTGTGGTCACCATTTTCACTGTACCTGTGTGGACAAATGGCTGCACATCAATGCTACTTGCCCACTCTGCAAGTATAACATCTTGAAAAGTAGCAGCCATGGTCAAGAAGAAGTGTAG 1092 0.467 MATTDPTPLIGSSSDESNSGRRILRAPSLRQAARFLRQASGRRLMREPSMMVRETAAEQLEERQSDWAYSKPVVILDIVWNFLFIIAAGTVLILSRNESPSSPLRLWIVGYALQCVLHVVCVCFEYRRRMRMRVNNHGGNVVGGGGSGDLSFDSMDSSGQYGDDGSTSMAKHLESANTMFSFIWWVIGFYWVSADGQDLIHDSPKLYWLSIVFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQARATKEDIEQLSKFKFQRKSQEKLAGNTQGPVGGIMIECQADSPIEHVLADEDAECCICLSAYDDGVELRQLPCGHHFHCTCVDKWLHINATCPLCKYNILKSSSHGQEEV* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3970 363 CDD RING-H2_RNF111_like 307 351 - -
Mal5g3970 363 SUPERFAMILY RING/U-box 298 355 - -
Mal5g3970 363 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 363 - -
Mal5g3970 363 PANTHER TARGET OF ERK KINASE MPK-1 3 363 - -
Mal5g3970 363 MobiDBLite consensus disorder prediction 1 21 - -
Mal5g3970 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 362 IPR013083 -
Mal5g3970 363 SMART ring_2 308 348 IPR001841 -
Mal5g3970 363 Pfam Ring finger domain 307 349 IPR001841 -
Mal5g3970 363 ProSiteProfiles Zinc finger RING-type profile. 308 349 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3970 Mal-Chr5 109269794 109275274 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3970 7 358 C3H Transcription Factor Family AT1G68070 47.619 5.62e-113 331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3970 5 109269794 109275274 Mal6g0186 6 2645385 2651425 PCT