Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3969 ATGGCTTCGTCATCATCCTCAAGCAACGGCGCCAGCTACGACGTGCCATGGGTAGAGAAGTACCGTCCCAGCAAGGTCGTCGACATCGTCGGCAATGAAGACGCCGTCTCCCGCCTCCAAGTCATCGCTCGTGACGGCAACATGCCCAACCTCATTTTATCGGGTCCTCCTGGAACTGGAAAAACCACTAGTATTCTCGCCCTTGCTCACGAGCTTCTCGGTCCCAATTACAGAGAAGCTGTTCTCGAACTCAATGCATCAGATGATAGAGGAATAGATGTTGTGAGGAACAAGATTAAGATGTTTGCTCAAAAGAAAGTAACGCTTCCTCCCGGCCGACACAAAGTTGTTATACTTGATGAAGCTGACAGCATGACATCTGGAGCACAACAAGCTTTGAGAAGGACAATGGAGATTTATTCTAATTCTACTCGTTTTGCGCTTGCTTGCAATACATCTGCTAAGATTATTGAGCCAATTCAGAGTAGGTGTGCCATTGTGCGATTTTCGCGATTGTCTGATCAAGAGATACTTGGTCGTCTCATGGTTGTAGTTCAAGCTGAGAAGGTTGCTTATGTTCCTGAAGGACTCGAGGCCATCATTTTCACTGCTGATGGTGATATGAGGCAGGGATTGAACAACTTGCAAGCAACATACAGTGGGTTCCAGTTTGTTAACCAAGCAAATGTTTTTAAGGTTTGCGACCAGCCGCATCCACTGCATGTGAAGAATATTGTGCGCAATGTGATTGAAGGGAATTTCGATGAGGCTTGTTCGGGGCTCAAGCAATTGTATGACTTGGGATATTCCCCCACAGATATCATCACCACACTTTTTCGTATCATAAAAAGTTATGACATGGCAGAGTACTTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCTCATATGAGGATTTGTGACGGAGTTGGTTCTTATCTTCAGATGTGTGGTTTGTTGGCTAAGCTTTCTCTTGTTCGTGACACTGCTAAAGCTGTGTGA 1002 0.4551 MASSSSSSNGASYDVPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVAYVPEGLEAIIFTADGDMRQGLNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNIVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKSYDMAEYLKLEFMKETGFAHMRICDGVGSYLQMCGLLAKLSLVRDTAKAV* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3969 333 Gene3D - 173 236 - -
Mal5g3969 333 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 7 331 - -
Mal5g3969 333 CDD HLD_clamp_RFC 172 234 - -
Mal5g3969 333 SUPERFAMILY post-AAA+ oligomerization domain-like 236 327 IPR008921 GO:0003677|GO:0006260
Mal5g3969 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 234 IPR027417 -
Mal5g3969 333 SMART AAA_5 47 173 IPR003593 -
Mal5g3969 333 CDD AAA 30 167 - -
Mal5g3969 333 Pfam ATPase family associated with various cellular activities (AAA) 51 169 IPR003959 GO:0005524|GO:0016887
Mal5g3969 333 PANTHER REPLICATION FACTOR C SUBUNIT 2 7 331 - -
Mal5g3969 333 Pfam Replication factor C C-terminal domain 237 322 IPR013748 -
Mal5g3969 333 Gene3D - 237 328 - -
Mal5g3969 333 Gene3D - 9 172 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3969 Mal-Chr5 109259992 109263902 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3969 1 332 Core DNA Replication Machinery Family AT1G63160 91.867 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3969 K10755 - gmx:100781364 615.92