Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3956 ATGGCTTCTTCATCTTCTTCTTCTTCTTCTTCTTCCAAAAGACACCCAACATACCACGGAATTAGAAGCCGAGGAGGAAAATGGGTGACTGAAATCCGCGAGCCTCGTAAGACAAACCGCATATGGCTAGGCACATTCCCTACCCCTGAGATGGCAGCCGCGGCTTATGATGTCGCGGCTTTGGCCCTCAAAGGCGGGGACGCTGTTCTAAACTTCCCTAATTCAGCTAGCAAGTACCCGGTGCCTGCGTCCAATTCACCGGATGATATCCGCAGTGCTGCCACTGCCGCAGCCGAATTAATGACGGCTGAAGCCGTTAATAATGATGCTGCTGGCTTTAATGGTAGTAATTGGTATGAAAATACTGAGTTTCTTGATGAGGAAGCTATATTCTCCATGCCAAGATTAATGGTAGAAATGGCTGAGGGAATGCTGCTTTCTCCTCCTAGAATGAATCCACCACCGTCTGAGTATTTGCCTGAATACTATACTTCGGGAGAAAGTTTGTGGAGCTATTATTGA 522 0.4751 MASSSSSSSSSSKRHPTYHGIRSRGGKWVTEIREPRKTNRIWLGTFPTPEMAAAAYDVAALALKGGDAVLNFPNSASKYPVPASNSPDDIRSAATAAAELMTAEAVNNDAAGFNGSNWYENTEFLDEEAIFSMPRLMVEMAEGMLLSPPRMNPPPSEYLPEYYTSGESLWSYY* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3956 173 MobiDBLite consensus disorder prediction 1 24 - -
Mal5g3956 173 CDD AP2 18 75 IPR001471 GO:0003700|GO:0006355
Mal5g3956 173 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Mal5g3956 173 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
Mal5g3956 173 PANTHER ETHYLENE RESPONSE FACTOR 6 173 - -
Mal5g3956 173 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 173 - -
Mal5g3956 173 ProSiteProfiles AP2/ERF domain profile. 17 73 IPR001471 GO:0003700|GO:0006355
Mal5g3956 173 MobiDBLite consensus disorder prediction 1 16 - -
Mal5g3956 173 SMART rav1_2 17 79 IPR001471 GO:0003700|GO:0006355
Mal5g3956 173 Pfam AP2 domain 19 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3956 Mal-Chr5 109111943 109112464 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3956 7 172 AP2-EREBP Transcription Factor Family AT5G52020 51.955 5.24e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal5g3956 AP2 7.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3956 - - gmx:100778793 212.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3956 5 109111943 109112464 Mal5g3956 5 109111943 109112464 ECH