Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3955 ATGAAATCATTACTTGATGAGTCTAGTTACGTTCAAAAATCAGAGAACCACTCCTACACAAGCTCATCATCAGAAACATGTTGCTACGAAGAAATCTTGTTAGCATCAGAACAACCAAAGAAACGTGCTGGGAGACGAAAATTCAAGGAGACAAGACATCCAGTGTACAGAGGAGTACGAAGGAGGAACAACAACAAGTGGGTTTGTGAAGTGCGTGTTCCAAACGACAAGTCCACGAGGATTTGGCTAGGAACATATCCAACACCTGAGATGGCAGCACATGCTCACGACGTTGCGGCGTTAGCACTTCGTGGTAAATCAGCTTGTCTGAATTTTGCTGACTCGGCGTGGCGATTGAATTTGCCTGCGTCGAACAATGCGAAGGAGATTAGGAAAATGGCGGCGGAGGCTGCTTTGGGATTTGCCGTTGAGGATAGTAAGGAAGAAATTATGATTAGTAATTGTGAAGTAATTTGTAGCAGTGATGTTAATAGTGTTGGTGTTATGGAAGTTGATAATAAACCTTTGCAGGGACTGTGTGTGGAAGTTACAGAGAAGGAGGAAATGTTGCATGATTGGTTTCGGAGTATGGCGAATGAGCCTTTACGATCTCCGGCAACACCATTTATAAGATATGGTATTGGTAGGGATCATTGGAATAGTGTTGAAATTGACCAGGTTGATGCAGAGGTGTCCTTGTGGAACTTTACCATCTAA 717 0.4324 MKSLLDESSYVQKSENHSYTSSSSETCCYEEILLASEQPKKRAGRRKFKETRHPVYRGVRRRNNNKWVCEVRVPNDKSTRIWLGTYPTPEMAAHAHDVAALALRGKSACLNFADSAWRLNLPASNNAKEIRKMAAEAALGFAVEDSKEEIMISNCEVICSSDVNSVGVMEVDNKPLQGLCVEVTEKEEMLHDWFRSMANEPLRSPATPFIRYGIGRDHWNSVEIDQVDAEVSLWNFTI* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3955 238 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Mal5g3955 238 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Mal5g3955 238 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 5 238 - -
Mal5g3955 238 Gene3D AP2/ERF domain 55 114 IPR036955 GO:0003700|GO:0006355
Mal5g3955 238 SUPERFAMILY DNA-binding domain 55 115 IPR016177 GO:0003677
Mal5g3955 238 CDD AP2 56 115 IPR001471 GO:0003700|GO:0006355
Mal5g3955 238 SMART rav1_2 55 119 IPR001471 GO:0003700|GO:0006355
Mal5g3955 238 ProSiteProfiles AP2/ERF domain profile. 55 113 IPR001471 GO:0003700|GO:0006355
Mal5g3955 238 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 238 IPR045277 GO:0003700
Mal5g3955 238 Pfam AP2 domain 54 105 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3955 Mal-Chr5 109106741 109107457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3955 9 236 AP2-EREBP Transcription Factor Family AT5G51990 46.639 1.01e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mal5g3955 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3955 - - gmx:100779318 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3955 5 109106741 109107457 Mal6g0161 6 2314107 2314763 PCT