Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3946 ATGGTTAGGGGAAAAACCCAAATGAAACGCATCGAAAGTGAGTCAAATAGACAAGTAACTTTCTCAAAGAGAAGAAATGGATTGCTTAAAAAGGCTTTTGAACTTTCAGTGCTTTGTGATGCTGAAGTAGCACTCATCGTTTTCTCTACCACAGGGAAACTCTATGAGTTCTCAAGTTCAAGTATAAGCAAAACAGTGGAACGCTATCAAGGGAAAATGAAGGACCTGTCTCTCAGCGGCACCAAAGGAATCCAAGAAAATACACAGCATCTAAAGGAATGTGACACCAACACAACAAAGATATTGGAACACCTAGAACTTTCCAAAAGGAAGCTGTTGGGGGATGAATTGGATAAATATGCTATTGACGAATTACAACAGATCGAAAACGAACTCGAACGCAGCTTAAGCAAAATTAGGGCAAGAAAGGATCAATTGTTCAAGGATCAAATTGAAAAGCTAAAAGAAAAGTGTGGAATTGAGCAAGATGGTTGTTTAAGTAAACAACAAGATAGCGAACTAATAACCGAAAGTCTTCGGGGAGAGGAGGAGGAGGTGGAGACGGAGTTGTTCATAGGGTGA 582 0.3986 MVRGKTQMKRIESESNRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSTTGKLYEFSSSSISKTVERYQGKMKDLSLSGTKGIQENTQHLKECDTNTTKILEHLELSKRKLLGDELDKYAIDELQQIENELERSLSKIRARKDQLFKDQIEKLKEKCGIEQDGCLSKQQDSELITESLRGEEEEVETELFIG* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3946 193 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mal5g3946 193 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal5g3946 193 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mal5g3946 193 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal5g3946 193 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal5g3946 193 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal5g3946 193 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Mal5g3946 193 Coils Coil 122 149 - -
Mal5g3946 193 PANTHER MADS BOX PROTEIN 1 193 - -
Mal5g3946 193 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal5g3946 193 PANTHER MADS-BOX PROTEIN SOC1 1 193 - -
Mal5g3946 193 Gene3D - 14 79 IPR036879 GO:0003677|GO:0046983
Mal5g3946 193 Pfam K-box region 88 158 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal5g3946 193 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Mal5g3946 193 ProSiteProfiles K-box domain profile. 88 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3946 Mal-Chr5 108975631 109001401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3946 1 155 MADS-box Gene Family AT4G22950 61.935 2.27e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal5g3946 K-box 3.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3946 - - mtr:MTR_4g102530 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3946 5 108975631 109001401 Mal5g3946 5 108975631 109001401 ECH
Mal5g3946 5 108975631 109001401 Mal5g1584 5 30894976 30901196 ECH
Mal5g3946 5 108975631 109001401 Mal3g2606 3 98741149 98748890 ECH