Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3944 ATGGGAGGAGCATGTGGGTACGGAAATTTGTTTCTGAACGGTTATGGGACAGACACAGCTGCATTGAGTTCAACATTGTTCAATAATGGGTATGCATGTGGGACTTGTTATCAAATAAAATGTGTTCAGTCAAGTGCATGTAACACCAATGTGCCTTACACTACAGTCACTGCCACCAATATTTGCCCACCGAATTGGTCTCAGGACTCCAATAACGGTGGATGGTGCAACCCACCACGTTCACATTTTGACATGTCTAAGCCCGCCTTCATGAAAATTGCACAGTGGAAGGCTGGTATCGTCCCTGTTATGTATCGCAGAGTACCTTGCATGAGAAGTGAAGGATTTAGATTCTCTTTCCAAGGAAATGGGTATTGGTTATTGGTGTACGTGATGAATGTGGGAGGTGGAGGAGATATTGCTAACATGTGGGTGAAAGGAAGCAGAACAGGATGGATTAGCATGAGCCACAATTGGGGTGCTTCTTATCAAGCATTTGCAACACTTAGTGGCCAAACTCTTTCTTTCAAGATTACTTCTTACACAACCAAAGAAACTATAATAGCATGGAATGTTGCTCCTTCCAATTGGGGTGCTGGATTAACCTATTCCACACATGTCAATTTTCATTGA 633 0.4297 MGGACGYGNLFLNGYGTDTAALSSTLFNNGYACGTCYQIKCVQSSACNTNVPYTTVTATNICPPNWSQDSNNGGWCNPPRSHFDMSKPAFMKIAQWKAGIVPVMYRRVPCMRSEGFRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSRTGWISMSHNWGASYQAFATLSGQTLSFKITSYTTKETIIAWNVAPSNWGAGLTYSTHVNFH* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3944 210 PRINTS Expansin/Lol pI family signature 23 41 IPR007118 GO:0005576
Mal5g3944 210 PRINTS Expansin/Lol pI family signature 98 114 IPR007118 GO:0005576
Mal5g3944 210 PRINTS Expansin/Lol pI family signature 152 166 IPR007118 GO:0005576
Mal5g3944 210 PRINTS Expansin/Lol pI family signature 1 19 IPR007118 GO:0005576
Mal5g3944 210 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Mal5g3944 210 Pfam Expansin C-terminal domain 117 194 IPR007117 -
Mal5g3944 210 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 125 205 IPR007117 -
Mal5g3944 210 PANTHER EXPANSIN-A15 1 210 IPR002963 GO:0009664
Mal5g3944 210 Gene3D - 115 210 IPR036749 -
Mal5g3944 210 PANTHER EXPANSIN 1 210 - -
Mal5g3944 210 SMART dpbb_1 19 105 IPR007112 -
Mal5g3944 210 Pfam Lytic transglycolase 19 105 IPR009009 -
Mal5g3944 210 PRINTS Expansin signature 90 103 IPR002963 GO:0009664
Mal5g3944 210 PRINTS Expansin signature 73 90 IPR002963 GO:0009664
Mal5g3944 210 PRINTS Expansin signature 14 28 IPR002963 GO:0009664
Mal5g3944 210 PRINTS Expansin signature 126 147 IPR002963 GO:0009664
Mal5g3944 210 PRINTS Expansin signature 54 64 IPR002963 GO:0009664
Mal5g3944 210 PRINTS Expansin signature 114 126 IPR002963 GO:0009664
Mal5g3944 210 PRINTS Expansin signature 161 182 IPR002963 GO:0009664
Mal5g3944 210 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 2 115 IPR007112 -
Mal5g3944 210 SUPERFAMILY Barwin-like endoglucanases 1 133 IPR036908 -
Mal5g3944 210 SUPERFAMILY PHL pollen allergen 114 204 IPR036749 -
Mal5g3944 210 Gene3D - 1 110 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3944 Mal-Chr5 108940268 108942278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3944 1 210 Expansin Gene Family AT1G12560 71.429 5.55e-112 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3944 - - tcc:18606420 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3944 5 108940268 108942278 Mal5g3944 5 108940268 108942278 ECH
Mal5g3944 5 108940268 108942278 Mal6g1658 6 30630423 30631733 PCT