Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3939 ATGGGGAGACAACCTTGTTGTGACAAACTTGGTGTGAAGAAAGGTCCATGGACAGCTGAGGAAGACAAGAAACTCATCAGTTTTATTCTTACCAATGGACAATGTTGTTGGCGTGCTGTGCCTAAACTTGCTGGCCTTAAGCGTTGCGGTAAGAGTTGTCGTCTTCGTTGGACAAATTATCTTCGTCCTGATTTAAAGAGAGGTCTCCTCACTGAAGCAGAGGAGCAGCTTGTTATTGATCTCCATGCCCGTCTCGGCAATAGGTGGTCCAAGATTGCTTCCAGGTTACCGGGGAGAACAGATAATGAGATTAAAAATCATTGGAACACCCACATCAAGAAAAAACTCATTAAGATGGGAATTGATCCCATTACTCATGAACCTTTGAATAAACAAGCATCATCCAATGATAGTAGTACTTCATCCCCTGCAGAGAATTTGTCACAGCCTGTTAGCAACCATGAAGTGAAGGAAACTGATGGAGTTGTCAACTCAGAGGAGAATTCAAGCTCATCACCAGCTGAAAACTCTTCAGGAGAAGATTCCCTTTTGCTAGATAGCATTTGTAGTGACGATTCTCTAATGAATAGTATATGGTTGGATGAAACACCATTGGTGGAAGCACTTTGGGAAATGGACACTACACCTATTGCAGATAATACAAAAAATGAGATGAATTTTGTGCCTTCTTGGGAGGATAATTGTGCTTGGCTATTTGATTGTCAAGACTTTGGAATTCATGATTTTGGATTTAATTGTTTCAATGAGATAGAGTCAAGTACAGTGCAAACTATAGGCATGAGCATGAAAGAAAATGAGCATTAG 825 0.4073 MGRQPCCDKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIASRLPGRTDNEIKNHWNTHIKKKLIKMGIDPITHEPLNKQASSNDSSTSSPAENLSQPVSNHEVKETDGVVNSEENSSSSPAENSSGEDSLLLDSICSDDSLMNSIWLDETPLVEALWEMDTTPIADNTKNEMNFVPSWEDNCAWLFDCQDFGIHDFGFNCFNEIESSTVQTIGMSMKENEH* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3939 274 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Mal5g3939 274 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mal5g3939 274 CDD SANT 16 61 IPR001005 -
Mal5g3939 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mal5g3939 274 Gene3D - 12 67 - -
Mal5g3939 274 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mal5g3939 274 MobiDBLite consensus disorder prediction 128 155 - -
Mal5g3939 274 MobiDBLite consensus disorder prediction 163 182 - -
Mal5g3939 274 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 257 - -
Mal5g3939 274 SMART sant 13 63 IPR001005 -
Mal5g3939 274 SMART sant 66 114 IPR001005 -
Mal5g3939 274 CDD SANT 71 112 IPR001005 -
Mal5g3939 274 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mal5g3939 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mal5g3939 274 Gene3D - 71 149 - -
Mal5g3939 274 PANTHER PROTEIN ODORANT1-LIKE 2 257 - -
Mal5g3939 274 MobiDBLite consensus disorder prediction 126 182 - -
Mal5g3939 274 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3939 Mal-Chr5 108879656 108880940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3939 1 264 MYB Transcription Factor Family AT4G12350 58.392 8.92e-104 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal5g3939 Myb_DNA-binding 3.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3939 K09422 - gmx:100786965 452.595