Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3902 ATGAATACATTTTCACATGTACCTCCAGGCTTTCGTTTTCATCCAACCGATGAAGAACTTGTTGATTACTACCTTAGGAAGAAGGTATCGTCTAAAAAGATAGATCTAGATGTCATCAAAGACGTTGATCTCTATAAAATTGAACCGTGGGATCTTCAAGAATTATGCAAAATAGGAAGTGATGAACAAAATGACTGGTATTTCTTTAGTCATAAAGATAAGAAGTACCCAACAGGAACTCGTACGAATAGAGCAACAAAAGCAGGTTTCTGGAAAGCCACAGGAAGAGATAAGGCAATATACTCAAAACAGTTCCTAGTTGGAATGAGAAAGACTCTAGTGTTTTATAAAGGACGTGCCCCAAATGGACAGAAATCTGATTGGATCATGCATGAATACCGTCTTGAAACTAATCAAAATGGAACTTCTCAGGAAGAAGGGTGGGTTGTATGCAGGGTATTCAAGAAACGTATGACAACAGTCCAGAAAATGAATGAATATGATCAATCACCCTGTAATTGGTATGATGATCAAGTTTCTTTCATGCCTGATCTTGAATCTCCAACCTCAACCAATCCTCACCCAAATTACACTTCATCATACCACTCCTGCAAACCTGAGCTAGAATTAATGCAATACAACAACATTTCCCACCATGATGCAGCTTTTCTTCAACTTCCACACCTTGAAAGTCCCAAAATTACTCAATCAATTATCCCTTATAATCATCATGCTCATGCAAACAATAACAATATTGCACTTACTCAACAACAACAGCAACAGGTGCAATATTTGCAGTATCATCAACAAAATCTTCACTCAATTTATGGTGGTGGTAGCAGCACATGTAATAATGATGAACAAGTAACTGATTGGAGAGTGCTTGACAAATTTGTTGCTTCTCAGCTGAGTCATGAAGATAATAATAATCATGATGGTTCTAATAAGCAAGCAGCTATTCTTCATGTGGCTGAACAAATTACTCTTCTTGCTAATGGATCCAAAAAGAATGAAATTTCTGATGAACATGCTTCAACTTCTACCTCAAGTTGCCACATGGAACTTTGGAAGTAA 1074 0.3706 MNTFSHVPPGFRFHPTDEELVDYYLRKKVSSKKIDLDVIKDVDLYKIEPWDLQELCKIGSDEQNDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKQFLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNQNGTSQEEGWVVCRVFKKRMTTVQKMNEYDQSPCNWYDDQVSFMPDLESPTSTNPHPNYTSSYHSCKPELELMQYNNISHHDAAFLQLPHLESPKITQSIIPYNHHAHANNNNIALTQQQQQQVQYLQYHQQNLHSIYGGGSSTCNNDEQVTDWRVLDKFVASQLSHEDNNNHDGSNKQAAILHVAEQITLLANGSKKNEISDEHASTSTSSCHMELWK* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3902 357 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Mal5g3902 357 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Mal5g3902 357 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Mal5g3902 357 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 346 - -
Mal5g3902 357 MobiDBLite consensus disorder prediction 343 357 - -
Mal5g3902 357 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Mal5g3902 357 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 346 - -
Mal5g3902 357 MobiDBLite consensus disorder prediction 336 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3902 Mal-Chr5 108348725 108352606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3902 1 357 NAC Transcription Factor Family AT1G12260 56.403 2.03e-136 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mal5g3902 NAM 9.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3902 - - gmx:100783529 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3902 5 108348725 108352606 Mal5g3902 5 108348725 108352606 ECH
Mal6g1604 6 29880534 29882319 Mal5g3902 5 108348725 108352606 PCT