Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3900 ATGGAAAAGTATTATGAGTTTGTTCAAGTCTTAAAGGATTACAACGATCAAAGAGTTGATACTAGAGGTATCCTTGCAAGAGTGGAAAAGCTGTTTAAAGGGCATTCGGATTTAATTTTTGGATTCAACAACTTCGTGCCAGAGGAATATCAAATCACACTTCCGTTGGATGATGATAAACAAGGTCATCAATTAGCAATAAAAGATGAATTTCTCAACGAAGTAAAAGTTGTTTTTCAAGATAAGATCGAAAAATATTTTGAATTTTTAGAAGCCGTGAAGGATCACAATGCTCAAGGAATTGATAGAAGAGGTGTCGTTGCAATAGTGAAAGAGTTGTTTAAAGGGCATACACATTTAATTTTGGGATTCAACACCTACAGTCCCAAAGAATATCAAATAACACTTTCATTTGAGCATGATGGTCACGAGACTGGTTAG 441 0.3469 MEKYYEFVQVLKDYNDQRVDTRGILARVEKLFKGHSDLIFGFNNFVPEEYQITLPLDDDKQGHQLAIKDEFLNEVKVVFQDKIEKYFEFLEAVKDHNAQGIDRRGVVAIVKELFKGHTHLILGFNTYSPKEYQITLSFEHDGHETG* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3900 146 PANTHER SIN3B-RELATED 2 103 IPR039774 GO:0003714
Mal5g3900 146 PANTHER PROTEIN, PUTATIVE-RELATED 95 141 - -
Mal5g3900 146 Gene3D Paired amphipathic helix 69 129 IPR036600 GO:0006355
Mal5g3900 146 Gene3D Paired amphipathic helix 1 47 IPR036600 GO:0006355
Mal5g3900 146 SUPERFAMILY PAH2 domain 2 50 IPR036600 GO:0006355
Mal5g3900 146 PANTHER SIN3B-RELATED 95 141 IPR039774 GO:0003714
Mal5g3900 146 ProSiteProfiles PAH domain profile. 54 131 IPR003822 GO:0006355
Mal5g3900 146 ProSiteProfiles PAH domain profile. 1 49 IPR003822 GO:0006355
Mal5g3900 146 PANTHER PROTEIN, PUTATIVE-RELATED 2 103 - -
Mal5g3900 146 SUPERFAMILY PAH2 domain 70 129 IPR036600 GO:0006355
Mal5g3900 146 Pfam Paired amphipathic helix repeat 84 127 IPR003822 GO:0006355
Mal5g3900 146 Pfam Paired amphipathic helix repeat 2 46 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3900 Mal-Chr5 108256956 108257396 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3900 2 58 WRKY Transcription Factor Family AT4G12020 56.897 5.24e-16 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal5g3900 PAH 6.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3900 K11644 - mtr:MTR_4g133300 193.356