Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3897 ATGTCGTCCTCTTCAACCACAACATTATCCTCCTTGGACCACCTCCCTCCTTCCGAGCAACTTTGTTATGTTCACTGCACAATCTGTGACACCATCCTTGCTGTGAGTGTTCCTTGCACAAGCTTGTTCAAGACTGTGACTGTGAGATGTGGTCATTGCACTAATCTCCTTCCAGTTAACATGCGTGCATTGCTTCTTCCATCTCCAAATCAGTTTCATTTGGGACACTCTTTCTTCTCCCCATCTCATAACCTTCTGCAGGAGGAGATGCCAAATCCAGCTCCAAATTTTATGATGAACCACATAAATGCACCAAATGATTTCTCTATGCCTCCTACAAGGACTGTAGCTGATGAGCTTCCACGCCCACCAATCATAAACAGACAGAAAAGACAGAGAGTTCCATCAGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCTGATATAACCCACAGGGAGGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTCCCACACATTCACTTTGGTCTCATGCCTGACCAGACCATGAAGAAGACAAATGTGTGCCAGCAGGAAGGAGATGATCAGGTTCTGATGAAAGATGGAGGGTTTTATGCTTCATCTAATCTTGGTGTTTCACCTTACTAA 654 0.4572 MSSSSTTTLSSLDHLPPSEQLCYVHCTICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHSFFSPSHNLLQEEMPNPAPNFMMNHINAPNDFSMPPTRTVADELPRPPIINRQKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNVCQQEGDDQVLMKDGGFYASSNLGVSPY* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3897 217 PANTHER PROTEIN YABBY 6-RELATED 1 215 IPR006780 GO:0007275
Mal5g3897 217 Pfam YABBY protein 17 179 IPR006780 GO:0007275
Mal5g3897 217 PANTHER PROTEIN YABBY 4 1 215 - -
Mal5g3897 217 Gene3D High mobility group box domain 126 176 IPR036910 -
Mal5g3897 217 SUPERFAMILY HMG-box 124 172 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3897 Mal-Chr5 108198378 108200853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3897 28 215 C2C2-YABBY Transcription Factor Family AT4G00180 55.238 5.81e-62 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Mal5g3897 YABBY 1.4e-65 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3897 K25796 - gmx:100798441 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3897 5 108198378 108200853 Mal5g3897 5 108198378 108200853 ECH