Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3856 ATGGAAAGACACAAATGCAAGCTTTGTTCAAGAACATTTGGCAATGGAAGAGCACTTGGTGGACACATGAAGGCTCATCTTGCCATAGCTAAATCTCAACAAAAACAACAATTCACTCAACCTTCTTCTTTTTCATCATCAGAATCTGAACAAGAAGAAGAAGAAGAAGAAAAAGCTTTGGTTAATTATGTGTTGAGAGAGAATCCTAAGAAAAGTCTCAAAGTTGCAGATCCTGAATTCTCTTTCATACCTGAAACTGAGTCTGTTATTGTTCAAGACAGAGAAAGTGAGACTGAGTCAAAAAACAACCCGACTCGTCAACAACGATCCAAACGGAACAGAAAACCAAACAACAACAACAACAACCAGAATTTTGAAACAAAGAAACCAAAGCTGAGTTTCATGGTACCAACAACACCATCATCATTCAATGATGCTGAACCTGTTAGCTCAGTTTCTGATACTTCTCCTGAAGAAGATGTTGCTATGTGTCTCATGATGCTTTCCAGAGACAAATGGAGTAGAAGAAGAAGAAACATCAACAATGTGGTGGAAGATGAACATGAAGAAGAAGAAGAGGGATCGGTGGAGAAAATATCGAAGGTGAAGTTGTTGAAACGCGTTCGTGGGAAGCATTTATGCGAAAATTGTGGGAAAACGTTTCGATCTTCAAGAGCATTGGGCAGTCATAAAAGTGTTTGTTGTCGCGGTGATGCGAAGAATGGTAATGGTAATGGTAACGATGATAAGATTTTTGAATGTCCATTTTGTTTTAAGGTGTTTGGTTCTGGTCAAGCACTTGGTGGACACAAGAGATCTCACCTCATGATCCCTTCTTCATCTAATTCCACTGCTAATGTTAATGTCAATGTTAATCCTTCTACTAGATTCAAAGAGAGTTTCATAGATCTCAATTTGCCAGCTCCACTTGAGGAAGAAGATGATCTTAGTGTTGTTTCTGATGCCTAA 969 0.387 MERHKCKLCSRTFGNGRALGGHMKAHLAIAKSQQKQQFTQPSSFSSSESEQEEEEEEKALVNYVLRENPKKSLKVADPEFSFIPETESVIVQDRESETESKNNPTRQQRSKRNRKPNNNNNNQNFETKKPKLSFMVPTTPSSFNDAEPVSSVSDTSPEEDVAMCLMMLSRDKWSRRRRNINNVVEDEHEEEEEGSVEKISKVKLLKRVRGKHLCENCGKTFRSSRALGSHKSVCCRGDAKNGNGNGNDDKIFECPFCFKVFGSGQALGGHKRSHLMIPSSSNSTANVNVNVNPSTRFKESFIDLNLPAPLEEEDDLSVVSDA* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3856 322 ProSitePatterns Zinc finger C2H2 type domain signature. 254 274 IPR013087 -
Mal5g3856 322 MobiDBLite consensus disorder prediction 30 47 - -
Mal5g3856 322 MobiDBLite consensus disorder prediction 91 134 - -
Mal5g3856 322 MobiDBLite consensus disorder prediction 114 134 - -
Mal5g3856 322 ProSiteProfiles Zinc finger C2H2 type domain profile. 212 233 IPR013087 -
Mal5g3856 322 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 322 - -
Mal5g3856 322 SMART c2h2final6 4 26 IPR013087 -
Mal5g3856 322 SMART c2h2final6 252 274 IPR013087 -
Mal5g3856 322 SMART c2h2final6 212 232 IPR013087 -
Mal5g3856 322 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 322 IPR044303 GO:0006355
Mal5g3856 322 SUPERFAMILY beta-beta-alpha zinc fingers 212 274 IPR036236 -
Mal5g3856 322 Gene3D Classic Zinc Finger 209 274 - -
Mal5g3856 322 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 274 IPR013087 -
Mal5g3856 322 MobiDBLite consensus disorder prediction 30 58 - -
Mal5g3856 322 Pfam C2H2-type zinc finger 252 274 - -
Mal5g3856 322 Pfam C2H2-type zinc finger 212 231 - -
Mal5g3856 322 Pfam C2H2-type zinc finger 3 28 - -
Mal5g3856 322 MobiDBLite consensus disorder prediction 91 106 - -
Mal5g3856 322 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Mal5g3856 322 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3856 Mal-Chr5 107568828 107569796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3856 1 319 C2H2 Transcription Factor Family AT3G60580 38.855 1.33e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal5g3856 zf-C2H2_6 7.2e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3856 - - gmx:100811637 297.745