Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3845 ATGGACAAGGAAGACATTGTCCTTCTAGAACTTCAACCAACCACTTCTTTGTCTTCCTTCATTATTGCCTCAACCTCTTCTAATTCCTCCTCCTCCTTAGAAGAAGAAGAAGAAACTACTAACTCTAAATGCAAAAAAATAAGCAATACCATCAACAAAGAAAAGAAAAAGAAGAAAGTGGGAATGGTGAATAAAGTGAATGATGGGAAGCATAATCCAACGTATAGAGGAGTAAGAATGCGTCAATGGGGAAAATGGGTATCAGAAATTAGAGAGCCAAGAAAAAAATCAAGAATTTGGCTTGGAACTTTTCCAACTCCAGATATGGCTGCTAGAGCTCATGATGTGGCGGCTCTTACTATCAAAGGCTCTTCAGCTTACCTCAATTTTCCCGAACTAGCTGCCGTGTTACCACGTCCAGCTAGTGCCTCTCCCAAAGATATCCAAGTTGCGGCTGCCAAAGCAGCCGCAACTGTTTACAACCATCCAATTACCAATCAACTCGAATTGGATGGTGAAGCTGAAGCTGAGTCGAGCCAAGCTGTTTCTTCTTCTTCTTCTTCGTCTTCTTCAAGCCATAGTGATGGATCATCATTGAAGGGTGAGGATGATATGTTTTTGAACCTTCCTGATCTCACACTTGATTTAAGACATAGTGGTGATGATGGGTTTTATTATTCTTCATCGGCTTGGCTTGTAAATGGAGCTCAACAAATAGAATCGGCTTTCCGGCTTGAAGACCCTATTCTATGGGACTCTTATCAAGTCACATAA 774 0.4121 MDKEDIVLLELQPTTSLSSFIIASTSSNSSSSLEEEEETTNSKCKKISNTINKEKKKKKVGMVNKVNDGKHNPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIKGSSAYLNFPELAAVLPRPASASPKDIQVAAAKAAATVYNHPITNQLELDGEAEAESSQAVSSSSSSSSSSHSDGSSLKGEDDMFLNLPDLTLDLRHSGDDGFYYSSSAWLVNGAQQIESAFRLEDPILWDSYQVT* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3845 257 MobiDBLite consensus disorder prediction 172 200 - -
Mal5g3845 257 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
Mal5g3845 257 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Mal5g3845 257 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Mal5g3845 257 MobiDBLite consensus disorder prediction 177 196 - -
Mal5g3845 257 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 24 250 - -
Mal5g3845 257 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Mal5g3845 257 MobiDBLite consensus disorder prediction 25 46 - -
Mal5g3845 257 Gene3D AP2/ERF domain 74 132 IPR036955 GO:0003700|GO:0006355
Mal5g3845 257 CDD AP2 75 133 IPR001471 GO:0003700|GO:0006355
Mal5g3845 257 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 24 250 - -
Mal5g3845 257 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
Mal5g3845 257 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3845 Mal-Chr5 107357422 107358195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3845 65 250 AP2-EREBP Transcription Factor Family AT2G44940 49.524 7.67e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mal5g3845 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3845 - - mtr:MTR_4g100650 334.339