Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3842 ATGACCCGGCGTTGTTCCCATTGCAGCCACAATGGGCACAACTCAAGAACATGTCCAAACCGTGGTGTGAAGCTGTTTGGAGTAAGATTAACCGATGGGATCAGGAAGAGTGCTAGTATGGGTAATCTTAGCCACTATACTGGGTCCGGGTCTGGACTCCTCAATACCGGGTCAAATACTCCGGGTTCACCTGGTGAAAACCCTGATCATGGTCCTGACGGTTATGGTTCTGAGGATTTTGTTCCTGGCTCTTCTTCTACTTCCCGTGAAAGAAAAAAGGGCACTCCATGGACTGAAGAGGAACATAGAATGTTTTTACTTGGATTGAACAAGTTGGGCAAAGGTGATTGGCGAGGAATTGCTAGGAACTATGTCATATCAAGGACACCTACTCAAGTGGCCAGTCATGCTCAGAAATATTTCATCAGGCAAAGCAATGTGTCTAGGCGGAAGAGACGGTCCAGCTTGTTTGATATTGTTGCAGATGATGCACCTGATACTTCAATGGTACCGCAAGACTTCTTGTCAGCTAATCAACTACAAACTGAAACAGAAGGCAATAACCCTTTGCCTGCTCCTCCTCCGCTCGATGAAGAATGTGAATCCATGGATTCTACAAACTCAAACGATGGAGAGTCTGCATCTGCCCCATTACAGCCCGACAGCAACGCACAAGCGTCGGCTTACCCGGTAGTATATCCGGCATATTATTCTCCATTCTTCCCTTTTCCTCTTCCCTACTGGTCTGGATACACTCCTGAGCCGGCTCCTATGAAAGAAACACATGAAGTGGTGAAGCCAACCCCAGTACATTCCAAGAGCCCAATTAATGTCGATGAACTCGTTGGCATGTCAAAACTGAGTTTAGGAGAGACTATCGGTGACGCTGGCCCCTCGACTTTGTCTCGTAAACTACTCGAAGAAGGTCCTTCTAGACAGTCGGCTTTTCATACAACTCCAGCTTGTGGGACTGTTCTGTGA 981 0.473 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGIRKSASMGNLSHYTGSGSGLLNTGSNTPGSPGENPDHGPDGYGSEDFVPGSSSTSRERKKGTPWTEEEHRMFLLGLNKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADDAPDTSMVPQDFLSANQLQTETEGNNPLPAPPPLDEECESMDSTNSNDGESASAPLQPDSNAQASAYPVVYPAYYSPFFPFPLPYWSGYTPEPAPMKETHEVVKPTPVHSKSPINVDELVGMSKLSLGETIGDAGPSTLSRKLLEEGPSRQSAFHTTPACGTVL* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3842 326 CDD SANT 96 141 IPR001005 -
Mal5g3842 326 MobiDBLite consensus disorder prediction 39 65 - -
Mal5g3842 326 MobiDBLite consensus disorder prediction 183 222 - -
Mal5g3842 326 MobiDBLite consensus disorder prediction 206 222 - -
Mal5g3842 326 PANTHER TRANSCRIPTION FACTOR KUA1 1 324 - -
Mal5g3842 326 ProSiteProfiles SANT domain profile. 92 145 IPR017884 -
Mal5g3842 326 SMART sant 93 143 IPR001005 -
Mal5g3842 326 SUPERFAMILY Homeodomain-like 91 146 IPR009057 -
Mal5g3842 326 PANTHER BNAC01G21010D PROTEIN 1 324 - -
Mal5g3842 326 ProSiteProfiles Myb-like domain profile. 89 141 IPR001005 -
Mal5g3842 326 Pfam Myb-like DNA-binding domain 96 141 IPR001005 -
Mal5g3842 326 MobiDBLite consensus disorder prediction 1 21 - -
Mal5g3842 326 Gene3D - 95 147 - -
Mal5g3842 326 MobiDBLite consensus disorder prediction 39 98 - -
Mal5g3842 326 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 92 144 IPR006447 GO:0003677
Mal5g3842 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 145 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3842 Mal-Chr5 107323438 107326503 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mal5g3842 Myb_DNA-binding 1.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3842 - - cam:101491712 549.666