Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3838 ATGGTTGAAAAGGAAGACTTGGGTTTAAGTCTTAGCTTGAACTTCTTTCACAATACCCCAAAACCTCTCCCTCTCAATTATTTCCATCCTCAAAAACCATCTTCCAACGAAACTTTCACTCCCTCAGATCGAAATTTGGAAACATGCAGAAGCGAAGGTGGAAAATACCTACGAGGAATTGACGTGAATCGGTTACCGTCTACGGTTATTGCTGAGTGCGAAGAAGAAGAAGAAGCAGGGGTTTCATCTCCAAACAGCACTGTTTCGAGTATAAGTGGAAAACGAAGTGAGAGAGAAGATCATGATGTGGAAAGAGGGAATATCAGTGATGAAGAAGACGCTGAAACCGCTAGAAAAAAACTTCGTCTCTCTAAAGATCAATCAGCTATTCTTGAAGAAACTTTCAAAGAACACAATACCCTTAATCCCAAGCAAAAGTTGGCACTTGCAAAGCAACTTGGCCTTCGTCCAAGACAAGTTGAAGTCTGGTTCCAAAACAGAAGAGCAAGGACGAAGCTGAAGCAAACGGAGGTTGATTGTGAAGTGTTAAAAAGGTGCTGTGAAAATCTAACGGAGGAAAATAGGAGGCTACAGAAAGAGGTTCAAGAGCTTAGAGCATTGAAACTTTCCCCTCAATTTTACATGCAAATGACTCCACCAACTACTCTTACCATGTGTCCCTCTTGTGAGCGTGTGGCTGTTCCATCCTCCGCTGTTGATGGATCTAACCGTCACCATCCTATGGCCCAAGCCCATCCTCGGGCTGTACCTATAGGCCCATGGGCTTCTGCAGCTCCACTCACAAATGTGATGTTTGATGTTTTCCGTCAATGA 834 0.4365 MVEKEDLGLSLSLNFFHNTPKPLPLNYFHPQKPSSNETFTPSDRNLETCRSEGGKYLRGIDVNRLPSTVIAECEEEEEAGVSSPNSTVSSISGKRSEREDHDVERGNISDEEDAETARKKLRLSKDQSAILEETFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVDGSNRHHPMAQAHPRAVPIGPWASAAPLTNVMFDVFRQ* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3838 277 MobiDBLite consensus disorder prediction 75 120 - -
Mal5g3838 277 SMART HOX_1 116 178 IPR001356 GO:0003677
Mal5g3838 277 Coils Coil 173 210 - -
Mal5g3838 277 ProSiteProfiles 'Homeobox' domain profile. 114 174 IPR001356 GO:0003677
Mal5g3838 277 SMART halz 174 217 IPR003106 GO:0006355|GO:0043565
Mal5g3838 277 ProSitePatterns 'Homeobox' domain signature. 149 172 IPR017970 GO:0000981|GO:0006355
Mal5g3838 277 CDD homeodomain 118 175 IPR001356 GO:0003677
Mal5g3838 277 MobiDBLite consensus disorder prediction 93 120 - -
Mal5g3838 277 PRINTS Lambda-repressor HTH signature 145 154 IPR000047 GO:0003677
Mal5g3838 277 PRINTS Lambda-repressor HTH signature 154 170 IPR000047 GO:0003677
Mal5g3838 277 Pfam HD-ZIP protein N terminus 1 99 IPR006712 GO:0005634
Mal5g3838 277 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 4 269 - -
Mal5g3838 277 Pfam Homeodomain 118 172 IPR001356 GO:0003677
Mal5g3838 277 SUPERFAMILY Homeodomain-like 113 175 IPR009057 -
Mal5g3838 277 Pfam Homeobox associated leucine zipper 174 208 IPR003106 GO:0006355|GO:0043565
Mal5g3838 277 PANTHER - 4 269 - -
Mal5g3838 277 Gene3D - 122 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3838 Mal-Chr5 107210225 107211565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3838 1 276 Homeobox Transcription Factor Family AT4G16780 61.168 2.58e-100 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mal5g3838 HD-ZIP_N 9.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3838 K09338 - gmx:100813367 404.445