Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3834 ATGGCTAACTATGATGAAGAAGTTTCAGCTCTTAAACGCATCAAATTTCATCTTCTTGGTGAATTCTCTCCACTTCCATCTCCAATTTCAACACCTTGCTTTGATTTTGATTTTGAATTTCAATCAACCCAAACATCATCTCAATTCGAATTTCAAACAAATCAAACCACTTCTCAATCTGAATCAAACTCTTCCACTTCTGATTCTTCAATTTCTTTAGATCATTATTTCACCAACCTCCTTGAAACAGATGCACAGATTCCTCTCTTTGAATTTGACACAAAACCACAATTAATGGAACATGAGAGCCCCAAAGCTCTTACATCTCATCCTTTTAACCAAAATCAACGAAATGTAGAGAAGAAGCCTAAACTGACTCGAAAACCGTCGCTGGAAATCGCTCTACCGAACAAAACCGAATGGATCCAATTCGGAAAACCAGATCCGAAACCGGAGGTGGTTGTACAAAAACAGGAAGTAAAGCAGCACTACAGAGGAGTTAGACAAAGACCGTGGGGAAAGTTCGCCGCCGAGATCCGTGACCCGAACAAACGCGGATCAAGAGTTTGGCTTGGAACTTTCGAAACGGCTATCGAAGCCGCTAAAGCCTATGATTCAGCCGCTTTCAGGATGCGTGGATCTAAAGCGATTCTCAACTTTCCACTTGAAGTCAACGCGGCGGCGGTGGCGGTGGCGGTGGCGGAGACCTCCGGCGACAAGAAACGTTGCCGTGAGGAGGAAGAGGAAGAGGTGGTAGAAGTAAAACCGGTGGTGAAAAAGGAGAAAATAACGGAATATGATATGAACTGTTTTAAAGAGATGCCGTTAACGCCGTCATTTTGGACTGGCTTGTGGGACGGTGATGTTAAGGGCACGTTCAGCGTTCCTTCGTCGCCGTTAACTTCCTTTTGTTTGTCACCTTTAGTTGCTGTGTGA 936 0.4412 MANYDEEVSALKRIKFHLLGEFSPLPSPISTPCFDFDFEFQSTQTSSQFEFQTNQTTSQSESNSSTSDSSISLDHYFTNLLETDAQIPLFEFDTKPQLMEHESPKALTSHPFNQNQRNVEKKPKLTRKPSLEIALPNKTEWIQFGKPDPKPEVVVQKQEVKQHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFETAIEAAKAYDSAAFRMRGSKAILNFPLEVNAAAVAVAVAETSGDKKRCREEEEEEVVEVKPVVKKEKITEYDMNCFKEMPLTPSFWTGLWDGDVKGTFSVPSSPLTSFCLSPLVAV* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3834 311 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Mal5g3834 311 PRINTS Ethylene responsive element binding protein signature 203 223 IPR001471 GO:0003700|GO:0006355
Mal5g3834 311 CDD AP2 162 221 IPR001471 GO:0003700|GO:0006355
Mal5g3834 311 Pfam AP2 domain 163 213 IPR001471 GO:0003700|GO:0006355
Mal5g3834 311 SUPERFAMILY DNA-binding domain 163 223 IPR016177 GO:0003677
Mal5g3834 311 Gene3D AP2/ERF domain 162 224 IPR036955 GO:0003700|GO:0006355
Mal5g3834 311 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 5 298 - -
Mal5g3834 311 SMART rav1_2 163 227 IPR001471 GO:0003700|GO:0006355
Mal5g3834 311 MobiDBLite consensus disorder prediction 47 68 - -
Mal5g3834 311 ProSiteProfiles AP2/ERF domain profile. 163 221 IPR001471 GO:0003700|GO:0006355
Mal5g3834 311 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 298 - -
Mal5g3834 311 MobiDBLite consensus disorder prediction 102 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3834 Mal-Chr5 107115120 107116055 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3834 81 311 AP2-EREBP Transcription Factor Family AT5G47230 49.367 3.32e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal5g3834 AP2 2.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3834 K09286 - gmx:100800453 322.013