Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3830 ATGTACGGAAATAGTAATTTTGATTCCGATCTTGCCCTTTTAGACTCTATTCGCCGCCACTTGTTAGGAGAATCAGAATTTATATTCGGAGCTCCAACAAATGTTTCGGGTAATACCCGGGTTTTCTCTCGGAGCTCCAGTTTCAGTAGTTTATACCCATGTTTAAGTGACAATTGGGGTGAACTACCACTCAAGGAAGATGATTCTGAAGATATGGTACTTTACGGCGTCCTCCGTGACGCTGTAAACGTCGGGTGGGTTCCGTCTCTTGAAGTCGGGTCACCTGAAAGTATTTCATCGGTTTTTCCGTTAGAAATAACGGTTAAACCGGAACCGGATGTTATGCCGGTGGAGAATATTCCCACGGTGGCGTCTACGGCGGAGCAAGTGGTTCCTGAGGGACCAAAAGCTGCTCCGGTGAAAGGAAAGCACTACCGCGGCGTGAGACAACGGCCGTGGGGAAAATTCGCGGCGGAGATTCGTGACCCGGCGAAGAACGGAGCTAGAGTTTGGCTCGGAACATTTGAAACCGCTGAGGATGCGGCTTTGGCTTATGATAGAGCTGCGTATAGGATGAGAGGTTCAAGAGCTTTGTTGAATTTTCCTCTTCGGGTTAACTCCGGTGAACCCGACCCGGTTAGAATAGCTTCAAAACGTTCTTCGCCGGAACGTTCTTCATCGGAAAGTGGTTCTCCGGCAAAGAGAAAGAAAGTAATGACAGGTCAGAGTGGATTGAAAACAGGACAAGTGGGAAGTCAAGTGGCACAACAATGTACACGTGGAGGACAGTTATTGGTTTCCTAA 804 0.4813 MYGNSNFDSDLALLDSIRRHLLGESEFIFGAPTNVSGNTRVFSRSSSFSSLYPCLSDNWGELPLKEDDSEDMVLYGVLRDAVNVGWVPSLEVGSPESISSVFPLEITVKPEPDVMPVENIPTVASTAEQVVPEGPKAAPVKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRIASKRSSPERSSSESGSPAKRKKVMTGQSGLKTGQVGSQVAQQCTRGGQLLVS* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3830 267 Pfam AP2 domain 144 194 IPR001471 GO:0003700|GO:0006355
Mal5g3830 267 MobiDBLite consensus disorder prediction 242 267 - -
Mal5g3830 267 Gene3D AP2/ERF domain 143 205 IPR036955 GO:0003700|GO:0006355
Mal5g3830 267 SUPERFAMILY DNA-binding domain 144 204 IPR016177 GO:0003677
Mal5g3830 267 ProSiteProfiles AP2/ERF domain profile. 144 202 IPR001471 GO:0003700|GO:0006355
Mal5g3830 267 SMART rav1_2 144 208 IPR001471 GO:0003700|GO:0006355
Mal5g3830 267 PANTHER BNAANNG21280D PROTEIN 26 245 - -
Mal5g3830 267 PRINTS Ethylene responsive element binding protein signature 145 156 IPR001471 GO:0003700|GO:0006355
Mal5g3830 267 PRINTS Ethylene responsive element binding protein signature 168 184 IPR001471 GO:0003700|GO:0006355
Mal5g3830 267 CDD AP2 143 202 IPR001471 GO:0003700|GO:0006355
Mal5g3830 267 MobiDBLite consensus disorder prediction 208 267 - -
Mal5g3830 267 PANTHER DNA-BINDING DOMAIN 26 245 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3830 Mal-Chr5 107065777 107066580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3830 1 266 AP2-EREBP Transcription Factor Family AT4G17500 53.472 2.93e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal5g3830 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3830 K09286 - gmx:100803653 327.405