LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g3827	ATGGCATATAATTTGAGGAATCGAAATCAAAAACTAAGTTATGCTGAAATGAGTGACTCCGAAAGTGAATCAAATAATTTGAGGAATCCTAATAAAAGACCAAGTTATGCAGAAATAAGTGACTCAGAAACCGAGTCAAATATTGAAAATTACAAGAGTGATGAAAGAAGAAAGGAAAGGGTAGAAGGCCAAATGTCAGAAAATCAGGGTAGACGGTATCCATTTTCTCGTAGACCAAGATATGGAATAGGTAATGTATGGGAAACAAGAAGTGATGTACAAAGTATGATAATGGAAACAACTCCATTATCAATGAATGAAATAGATACTAATGTTCCAGAAACAAGTAATAATCCAGAACAGAGATTGTCAATGGAAACATCTCCATCATCAATGAATGAACCAATCAATGTTCAACAAACAAGTCATAATCAGGAACATAGTTTGATGACAGAAACAAATCCAAGCACAATAGTGGGGACTTCATTGATGAATGTAACAGATATTAATGTTCCAGAAACAATTAATAATCTGGAACAAAGTTCGACGATGGAAACAACTTCATCATCAATTCCCGGGCCATTACCGAGCACAAGTGTGGGAACTTCATCAGGTCAACAAGAACATTCTAAAAAAACCATCATAGCATGGTTGACAGCTTGCAAGGAAATTGATGAAGGGAACAAAGTGCACTACCATGATGGGGAAAAATTGGTAACCAGCCGAATTTGCAACGGAGGCATCATATGTAACTGTTGCGACGAGGAAATGTCTGAGAAGGAGAAGGAAAATTCATCAAATGTGGAAAATGCCCCTCCATTTATCACTGTTCTTGTGCTTATTATCGGGAGGGTGTTTCTCGAGACAACGGTAAATATTGGTTTTGTCCTTACTGCAGGTGCAAATACTATTGATAAGGAATTGAAGGACTTGATTGGATACAAAAATGATATCAATGGGAAGGAGAACTTTTCTTGGAGAGTTCTCCAACAAACGGATACAAAAAGTGAAGATCATTATGTAATAAGCAATTCAAAGGTTGCAGTTGCTTGCATGTTGATGAAAGAAGCTTTTCAGATAACAGATCCACATACTGGTGTTAATGTGGTACAAAGTGTTGTATACAGCTGCAGATCAAATCTAAGGAGGCTCGATTTTCGTCGATGTTATACATTTGTCATAGAAGAAGATGACGCGATCATTGCTGCAGCAACTATAAGATTTCATGGGAGTGACATAGCAGAAATGCCTTTCATTGCCACAGATGAAGCATACAGGGGCAAAAGAATTTGCCATTTGCTAATGGGGATAATTAAATCGTTTCTTGAAAGTCTTAAAGTTGAAAATTGGATAATTTCATCTAATCCTGCGACTCTTGAAATGTGGAAGAACAAATATGGCTTCGATGCGGTCTACAACAAAAAGTTGAAGAAAAAACAGGATTCATGTAACATTTTGATGTTTCCCGGAGCTATAAAATTACACAAAGATGTTATTCTTCCTGACTTGAATGAATGTGTAGTTGGGTTAAAAATTTGGTGTTGTTGTTGTCTTGTGAGCAATGTTAAAGAAGGTGAGGAAGATGAAGGAAAAAGGAACGACGCGCGGAAAGAAGGAAGAAGGAACAAGGAACGAAGGAAGACAAAAGACAGAAGAATGGACAACGAAGAAGGAACAAGGACATTGGAGGAAGGAAGAATGAGGGCAAACGGTGATGGAAGAAAGAGAAGGAGGGCGACGGTGACGAAGAAGGATGACGACGGTGGTGGACGAAGGATGAAGGAAGGTGACAATGAGGGAAGAAGGAGGAAGGAAGAAGGCTAA	1824	0.3827	MAYNLRNRNQKLSYAEMSDSESESNNLRNPNKRPSYAEISDSETESNIENYKSDERRKERVEGQMSENQGRRYPFSRRPRYGIGNVWETRSDVQSMIMETTPLSMNEIDTNVPETSNNPEQRLSMETSPSSMNEPINVQQTSHNQEHSLMTETNPSTIVGTSLMNVTDINVPETINNLEQSSTMETTSSSIPGPLPSTSVGTSSGQQEHSKKTIIAWLTACKEIDEGNKVHYHDGEKLVTSRICNGGIICNCCDEEMSEKEKENSSNVENAPPFITVLVLIIGRVFLETTVNIGFVLTAGANTIDKELKDLIGYKNDINGKENFSWRVLQQTDTKSEDHYVISNSKVAVACMLMKEAFQITDPHTGVNVVQSVVYSCRSNLRRLDFRRCYTFVIEEDDAIIAAATIRFHGSDIAEMPFIATDEAYRGKRICHLLMGIIKSFLESLKVENWIISSNPATLEMWKNKYGFDAVYNKKLKKKQDSCNILMFPGAIKLHKDVILPDLNECVVGLKIWCCCCLVSNVKEGEEDEGKRNDARKEGRRNKERRKTKDRRMDNEEGTRTLEEGRMRANGDGRKRRRATVTKKDDDGGGRRMKEGDNEGRRRKEEG*	608

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g3827	607	MobiDBLite	consensus disorder prediction	181	207	-	-
	Mal5g3827	607	MobiDBLite	consensus disorder prediction	527	541	-	-
	Mal5g3827	607	MobiDBLite	consensus disorder prediction	1	79	-	-
	Mal5g3827	607	Gene3D	-	353	485	-	-
	Mal5g3827	607	ProSiteProfiles	Gcn5-related N-acetyltransferase (GNAT) domain profile.	352	492	IPR000182	GO:0016407
	Mal5g3827	607	SUPERFAMILY	Acyl-CoA N-acyltransferases (Nat)	374	471	IPR016181	-
	Mal5g3827	607	MobiDBLite	consensus disorder prediction	107	131	-	-
	Mal5g3827	607	MobiDBLite	consensus disorder prediction	45	66	-	-
	Mal5g3827	607	PANTHER	PHD FINGER PROTEIN 12	140	275	IPR042163	GO:0003714\|GO:0045892
	Mal5g3827	607	PANTHER	PHD FINGER PROTEIN 12	302	499	IPR042163	GO:0003714\|GO:0045892
	Mal5g3827	607	Pfam	Acetyltransferase (GNAT) family	381	468	IPR000182	GO:0016407
	Mal5g3827	607	PANTHER	GNAT FAMILY ACETYLTRANSFERASE	140	275	-	-
	Mal5g3827	607	PANTHER	GNAT FAMILY ACETYLTRANSFERASE	302	499	-	-
	Mal5g3827	607	CDD	NAT_SF	392	448	-	-
	Mal5g3827	607	MobiDBLite	consensus disorder prediction	1	44	-	-
	Mal5g3827	607	MobiDBLite	consensus disorder prediction	527	607	-	-
	Mal5g3827	607	MobiDBLite	consensus disorder prediction	548	607	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g3827	Mal-Chr5	106996771	107000349	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g3827	288	508	PHD Transcription Factor Family	AT4G14920	37.281	1.15e-38	150

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g3827	-		-	mtr:MTR_4g099530	292.737