Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3817 ATGGGAAAACAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGTAATGGACCACCTGAGAAGCCAATTTTGTGCAATGCATGTGGATCTCGGTGGAGGACAAAGGGAACACTTGCAAATTATACCCCTTTACATGCTCGGACAGATCCTGTCGATTTTGAGGATCAAAGAGTTTCAAGGTTAAAGATTGTATCATTAAATAAGAACAAAGAAGTGAAATTGGTTAAACGAAAGCAGAACCATGATAATGCTTATGCTGCATCTGGAGGGTTCACCCCTGAATATAATCAAGGATTCCAAAAGGCTGTGGGTGAGGATACAAGCAATAGATCAAGTTCAGGGTCAGCCATCTCTAATTCAGAAAGCTGCGTTCAATTTGGTGGCACCGATGCTAGTGATTTGACAGGTCCTTCTCAGTCAGTGGTCTGGGATACTGTGGTGCCTTCAAAGAAGAGGACATGTGGCGGTCGTCTGAAGCATTCTTCTGTTGAGAAACTCACACAAGACTTGTATACTATTCTTCATGAACAACAACAGTCTTGTTTTTCTGCTTCTTCTGAAGAGGAACTTCTTTACGAAAGTGAAACGCCGATGGTCTCTGTTGAGATAGGACATGGAAGTATGCTTATTAGGCATCCTAGCTCTATAGCTCGTGACGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGTCTAATGAATGAGGCATATTCGTGTTATGGTTCGATTCCCATGCTTAGTGATTACACTGGCATGAATTTCTCTTCCCAGGGAGTTGCAATGGTCAGAAACTCTGCTGGCCAAAGACTGCAACAGGAGCAACTTGTGAGGGACAAGTCTCAGCTTGAAAAACTAGAAGTTCTTGGAAATCATGATTCACCACTGTGCTTAATAGATTTAAATGATGTAGTGAACTATGAGGAGTTTTCAAGAAATTTGACAAATGAAGAGCAGCAGCAATTACTGAAGTATCTCCCTGTGGATGATACTGCTAAATTTCCTGATAGCCTTAAAATTATGTTCGATAGCTTTCAATTCAAGGAGGAGTTAACTTACTTTCAGAAACTTCTCGGGGAAGGTGTCTTCGATATTTCTTTGTTGGGGGAAAACCCTGAAGACTGCAAGACGTCTAAAAGGCTTGCATTGTCTAATTTGTCAAAATCAAAATGTGTAGAACACTATAATTTTCTCAAGAAAGGTGGAAACAAAGCTGGAAAACATAATGATATGGAATCTCCTGCTGTGGCATCAAGTAATGTTGCGAATGTTAAGAGATTCCGTGTCAGCCAAAATCAAAATTTTCCAGAATTGAAGACAACAATGAGGAGTCCCAAAAGGGTGATCGTAAAACCTGGCGGTGGCGGCAAAGAAGTTGTAGATGGCTCTAGCATTAGTCCGAAAAGCCTATTTGCATTGCCTCACAATGGTGGCTTGTGCATGCTGGATACTTCAAATTTCGTTGATGAGAGTTCAGATCAGGATCTGCTGCTAGAGTTTCCATCTAACAATTCTTTTCCACAGGCAGAGCTCCTGCTCCCAAGTTCTAGCTTGGCTGCTCAAGGAAGCACCAGTAGTAGCTCAGTATACTCGCATGTTACTCGTCCTTGA 1629 0.4193 MGKQGPCYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARTDPVDFEDQRVSRLKIVSLNKNKEVKLVKRKQNHDNAYAASGGFTPEYNQGFQKAVGEDTSNRSSSGSAISNSESCVQFGGTDASDLTGPSQSVVWDTVVPSKKRTCGGRLKHSSVEKLTQDLYTILHEQQQSCFSASSEEELLYESETPMVSVEIGHGSMLIRHPSSIARDEESEASSLSVDNKQCLMNEAYSCYGSIPMLSDYTGMNFSSQGVAMVRNSAGQRLQQEQLVRDKSQLEKLEVLGNHDSPLCLIDLNDVVNYEEFSRNLTNEEQQQLLKYLPVDDTAKFPDSLKIMFDSFQFKEELTYFQKLLGEGVFDISLLGENPEDCKTSKRLALSNLSKSKCVEHYNFLKKGGNKAGKHNDMESPAVASSNVANVKRFRVSQNQNFPELKTTMRSPKRVIVKPGGGGKEVVDGSSISPKSLFALPHNGGLCMLDTSNFVDESSDQDLLLEFPSNNSFPQAELLLPSSSLAAQGSTSSSSVYSHVTRP* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3817 542 Gene3D - 294 394 IPR038108 -
Mal5g3817 542 MobiDBLite consensus disorder prediction 523 542 - -
Mal5g3817 542 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Mal5g3817 542 PANTHER OSJNBB0038F03.10 PROTEIN 1 542 IPR044589 -
Mal5g3817 542 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Mal5g3817 542 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 542 - -
Mal5g3817 542 Pfam Asx homology domain 290 370 IPR028020 -
Mal5g3817 542 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Mal5g3817 542 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 298 409 IPR044867 -
Mal5g3817 542 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Mal5g3817 542 CDD ZnF_GATA 6 55 IPR000679 GO:0006355|GO:0043565
Mal5g3817 542 Gene3D - 3 87 IPR013088 GO:0006355|GO:0008270
Mal5g3817 542 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3817 Mal-Chr5 106827098 106832194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3817 1 518 C2C2-Gata Transcription Factor Family AT4G17570 51.796 6.38e-150 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal5g3817 ASXH 1.4e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1515 6 28243233 28247217 Mal5g3817 5 106827098 106832194 PCT