Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3816 ATGGAGCTTAGTCTTAAGCATCAATTTAGCCTTGTTTGTGTTATATTGTTGTTTCCAGCACTATGTAATTGCAAGGAATATTATACCAAATCTAGAGCTTCCTATTATGGCACCTCAGATGGCTATGGAAATCCAAGGGGAGCTTGTGGTTTTGGTGACTATGGAAAGATGGTCAATGATGGTAGTGTCACAGCTGTGTCTGCAAAGTTGTGGAAGAATGGAGGAGGTTGTGGTGCATGTTATCAAGTGAGATGCAAAATACCACAATATTGTGATGACAATGGAGCTTACGTGGTGGTAACCGACTATGGTGAGGGAGACAGAACGGACTTCATATTGAGCCCACGTGCCTTTTCAAAATTGGGACGCAACGGAGCTGCATCTGAAAAGTTGAAGAAATATGGAGTACTGGATGTTGAATACAAAAGGGTCTCGTGTACATTCAAAGGCAACAATATCGTGTACCAGATCAATGAGCATAGTAAAAACCCAGGTTACTTTGCTATTGTGATCCTCTATGTTGGTGGAAAATATGATGTCACTGCTGTTGAGATGTGGCAGAAAGAACAGCACAAATGGGAGCCCATGCGTAGGTCATATGGAGCAGTATTTGACTTTGCTAACCCACCCAAAGGTGAAATCAAATTGAGATTCCAAGTTAGTAGCAATGTTTGGGTGGAGTCAAGGTTCGCAATACCTGCAGGTTGGAAAGCTGGTGCTACTTATTCCACTAAGATTCAGCCTTATTAA 750 0.42 MELSLKHQFSLVCVILLFPALCNCKEYYTKSRASYYGTSDGYGNPRGACGFGDYGKMVNDGSVTAVSAKLWKNGGGCGACYQVRCKIPQYCDDNGAYVVVTDYGEGDRTDFILSPRAFSKLGRNGAASEKLKKYGVLDVEYKRVSCTFKGNNIVYQINEHSKNPGYFAIVILYVGGKYDVTAVEMWQKEQHKWEPMRRSYGAVFDFANPPKGEIKLRFQVSSNVWVESRFAIPAGWKAGATYSTKIQPY* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3816 249 Pfam Expansin C-terminal domain 155 233 IPR007117 -
Mal5g3816 249 Gene3D - 25 144 IPR036908 -
Mal5g3816 249 PANTHER EXPANSIN-B3 4 247 - -
Mal5g3816 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 151 IPR007112 -
Mal5g3816 249 Pfam Lytic transglycolase 64 141 IPR009009 -
Mal5g3816 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 244 IPR007117 -
Mal5g3816 249 SUPERFAMILY PHL pollen allergen 152 243 IPR036749 -
Mal5g3816 249 SUPERFAMILY Barwin-like endoglucanases 15 151 IPR036908 -
Mal5g3816 249 SMART dpbb_1 63 141 IPR007112 -
Mal5g3816 249 Gene3D - 148 249 IPR036749 -
Mal5g3816 249 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 247 - -
Mal5g3816 249 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Mal5g3816 249 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Mal5g3816 249 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Mal5g3816 249 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Mal5g3816 249 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Mal5g3816 249 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3816 Mal-Chr5 106807474 106818888 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3816 5 246 Expansin Gene Family AT4G17030 51.406 1.61e-90 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3816 - - gmx:100779487 369.007