Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3779 ATGGTTTGTACTGCCAATGATTTACAAGAATGGAAAGATTTTCCCAAAGGACTCAAGGTTCTTCTCCTTGAGGGAGACAACACTTCTGTTTCTGAGATAAGAACAAAGCTTGAGGCCATGGACTATAATGTTTCTATATTCTGCGATGTGAATGAAGCCTTGTCAGCAATCTCTAGTAGACCTGAAGATTTCCATATAGCCATAGTGGAGGTGAGTTCAAGCAGTTGCGAGGGAGGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATCATGACTTCAAACAACGATTGCCTGAACACCATGGTGAAGTGCATAGCTCTTGGAGCAGTGGAGTTTCTCAGCAAACCACTCTCTGAGGACAAGCTCAGAAATATTTGGCAGCATGTGGTTCACAAGGCGTTCAATGCTGGGGTAAGTGCGCTGTCTGAATCACTGAAACCTGTCAAGGAATCTGTAGCCTCCATCTTGCAGCTCCAAACAGACAACAAACAAGAAGAAAATAAAGCCTTGATCGAGTTGGAGCAAGTATCAATGTTTTCTGACAATGACCATCATGAGCATTATCCAGCTCCTTCAACCCCACAATTGAAACAGGTGGGAAGATTACTTGATGATGGGGATTGCCAAGAGCAGACTAATTGCTCCACAGAAAAAGAAAGTGGGGAACATGATGGAGAATCTAAATCTGTCGAAACTACATGTGAAAATTTGAATACTGAAAGTACTACTCAACAAAGGAAATCTGAAGCTACTTTGGTTCAGAAGGAACACGAGGAATTTGCCGATGCTTCTAAGTGTGAGAGTGTTGTTTCACCACATTTACCAAATGTGAAGGTTCTCCACAATAGTGAAAATAATATAACGTCTGCAAATAAAGTAGGTGTTCTTAGTAAAAAATGTGAGATAAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACGCCAGAGCTGCACAAAAAATTTGTGAAGGCAGTGGAGCAACTAGGCATTGATCACGCTATTCCTTCTCGAATATTGGATCTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAATATAGAATGCATAAGAGACATATCTTGCCGAAGCAAGAAGATCGGAAATGGCTAAATCCAAGGGATCCAATTCAAAGGAACTATTGTCTTCAAAGACCAATTATGCCCGGTCCTCCATCATATTATTCTAACCATACCCTTCCTCCTCTAGCTCCTTTATATCCTATGTGGGGACAATCTGGAACTCAAATGGCTGGCATGCAGGTTTGGGGCCATTCTGGTTATCCCGTGTGGCAGCCTACAGAAAGTTGGCACTGGAAACCATTTCCGGGGATGCATCCAGATACATGGGGCTGCCCGGTGTTACCACCACCTCAACCTCCTTGCTATTCCTACTCTCAGAATATACCTGCAGTGAGTAACGCTAATGCAATGGATTACACATTTAGCATGCCACATAGTTCCTTTGACGATTATCTGGCAGACAATGAGGTTATTGACAATGTTGTGAAGGAGGCAATAAGTAAGCCATGGCTACCTTTGCCGATAGGCCTCAAACCTCCTTCCACGGATAGTGTGTTGGCTGAGCTTTCAAGGCAAGGCATTTCCAGCATCCCTCCAAGCTACAATGATTCTATTCCCAATTGA 1668 0.4305 MVCTANDLQEWKDFPKGLKVLLLEGDNTSVSEIRTKLEAMDYNVSIFCDVNEALSAISSRPEDFHIAIVEVSSSSCEGGFKFLENAKDLPTIMTSNNDCLNTMVKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGVSALSESLKPVKESVASILQLQTDNKQEENKALIELEQVSMFSDNDHHEHYPAPSTPQLKQVGRLLDDGDCQEQTNCSTEKESGEHDGESKSVETTCENLNTESTTQQRKSEATLVQKEHEEFADASKCESVVSPHLPNVKVLHNSENNITSANKVGVLSKKCEIKANRKKMKVDWTPELHKKFVKAVEQLGIDHAIPSRILDLMKVEGLTRHNVASHLQKYRMHKRHILPKQEDRKWLNPRDPIQRNYCLQRPIMPGPPSYYSNHTLPPLAPLYPMWGQSGTQMAGMQVWGHSGYPVWQPTESWHWKPFPGMHPDTWGCPVLPPPQPPCYSYSQNIPAVSNANAMDYTFSMPHSSFDDYLADNEVIDNVVKEAISKPWLPLPIGLKPPSTDSVLAELSRQGISSIPPSYNDSIPN* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3779 555 Gene3D - 18 141 - -
Mal5g3779 555 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 307 366 IPR017930 -
Mal5g3779 555 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 543 IPR044825 GO:0003700|GO:0045893
Mal5g3779 555 Coils Coil 158 178 - -
Mal5g3779 555 MobiDBLite consensus disorder prediction 218 232 - -
Mal5g3779 555 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 543 - -
Mal5g3779 555 SUPERFAMILY CheY-like 16 134 IPR011006 -
Mal5g3779 555 Gene3D - 306 368 - -
Mal5g3779 555 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Mal5g3779 555 SUPERFAMILY Homeodomain-like 309 367 IPR009057 -
Mal5g3779 555 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 310 365 IPR006447 GO:0003677
Mal5g3779 555 MobiDBLite consensus disorder prediction 209 233 - -
Mal5g3779 555 SMART REC_2 18 128 IPR001789 GO:0000160
Mal5g3779 555 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Mal5g3779 555 Pfam Myb-like DNA-binding domain 313 362 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3779 Mal-Chr5 106233900 106238590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3779 1 548 Response Regulator Gene Family AT4G18020 48.705 2.16e-139 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mal5g3779 Response_reg 5.6e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3779 - - mtr:MTR_4g098870 1050.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1479 6 27357055 27362192 Mal5g3779 5 106233900 106238590 PCT