Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3759 ATGGGTTGTACGGTGAGAGATAAACACATCAGAGCTAATCGGCGACCACGATCGGCGGCGGTAGCGGCGGCGAAACCCGATTCGGTTTCATCGGAAATCAAAGACGCGATTTCCAAATCAATAGAGGAATCGGGTCTTAAACCCTTCAAATACGATCTTTCTCGCGTCGATTCTTCGAATTCTCACTGTCTTATTCCTCTTCCCAATCCAAACCCTAATTCCGATGAACCGGGTTGGGGTTACTGCACTGAGGAACAATTGGAGGAGATTCTGTTGAAAAACTTGGAATTTGTTTACAATGAAGCTATTTCAAAGATTGTTGCTTTGGGTTATGATGAAGATGCGGCGTTGAAAGCGGTTTTGAAGAATGGACATTGTTATGGTGGGATGGATGTTTTGACGAATATTTTGCATAATTCGTTGGCATTTTTGAATATTGATAATGGTGGTTTTGCTGGTGCTGGTGATTTTGCTGGTACTGATGGTCCTGTTGGTGCTGGTTTTGGTGGTCCTGTTGGTGCTGGTTTTGGTAATAATGATGGGGACATAGATGAGATTGAACCTGTTTTCGCTGATTTGAAGCATTTGGAGGAGTATTCTTTGGCTGGTATGGTGTGTTTGTTGCAACAGGTTAGACCTAATTTGAGTAAAGGTGATGCAATGTGGTGTTTGCTTATGAGTGATCTTCATGTTGGGAAAGCTAGTACTATAGAGATTCCTGTGCCGGGGAGTGCGGGTGCGAGGGGGGCTGCTGTTGTTGAGGCTGGTGGTCAGTTGGGACGTAATCCGGTTGCTGTTAAGGCTCCTCCCCTTTGTAAGTTTCATGGGGGGTGGGGATTTGGAAATGGGGATTACCCCACGAATGCGAATGGGATATTGTCTTGCGGTCCGGTTTTGCAGAGAGAGATTGAATTCCCGAAGAGGTTTGATCTTTCTCCGCAAATGAAGGCTTTGTTGAAGAAAAATGTTACAATGTTTGCTGCTGGTTTTAGAGCAAATACTAAACAATTGCAGGCGAAGGGGAAGGCCAATGTTCCTAGTCGTAGCACTAATTTGGATTCTCCGGTTGTATCTGGGGCTGAAATCACGGTTGATCCGTGTGGACATTCTCGGGTTGTTGATAACCAAGAGGCTGTGAACTCGGTGCTGAGTAAATTCCGTGACTTGAATCTTGATGAGAATTTGGAGTTTGTGGCCGAGGATCAGAAGGATGAGGTGATAGTAAGTATATTTCATCAGATAAAGGATTTGGAAAAACAGGCCAAGGAGCGGAAAGAATGGGCCCATTTGAAAGCATTGCAGGCTGCAAAGAAGCTAAGCAGTGATTTGACTGAGCTCAAAACGTTACGGATGTGTAGAGAGGAGACCCAAAAATTGAAGAAAGGGAAACAGGCACTTGAGGACACAACCATGAAGAGACTCTCAGAGATGGAGAATGCTTTGAGAAAGGCTAGTGGTCAAGTAGACCGTGCAAATGGAGCTGTGAGAAGATTAGAGACTGAGAATGCTGAAATCAGAGCAGAGATGGAGGCCTCGAAATTAAGCGCATCAGAGTCGGTGACAGCTTGCTTGGAAGTTGCGAAAAAGGAGAAAAAGTACTTGAAGAAACTTCTAGCTTGGGAAAAACAGAAAGCAAAGCTACAGAAGGAGATTTCCGATTTGAAAGATAAGATATTAGAGGATCGGGAAGTGTCGGCTCAGAATAAACAGCGCCAAAAAGAAGCTGAGGCTAAATGGAAGGAGGAGTTGAAGGCTCAAGAAGATGCTTTGGCACTAGTTGAAGAGGAGCGCCGTTCCAAGGAAGCAGCTGAATCAGAAAATAAGAGGGGGTTTGAGGCTTTGCGTCTGAAGATAGAATTAGATTTCCAGCGCCACAAGGATGATCTAAGCAGACTTGAGAATGATCTTTCACGCCTTAAAGCATCTGTTCGATCTGCTGCATTGCATCACCAAAATACTTCACCTATAAAAGACTTTGAGGGTACAAAGCCTCAAAGAGAGACAATTGCTAAGCTGCTTTTGGATTTGGATGATTTATCAGAAAATGAAGCTAATAACAACAGAGAATGCATTATATGCATGAAAGATGAAGTCTCCGTTGTTTTCTTGCCGTGTGCTCACCAAGTCATGTGTGCTAAATGCAGTGATGAGTATGGGAAAAATGGTAAGGCTGCTTGTCCTTGCTGCCGAGTTCAAATCCAACAGAGAATCCGTGTATTTGGGGCATGCTCATAG 2235 0.4425 MGCTVRDKHIRANRRPRSAAVAAAKPDSVSSEIKDAISKSIEESGLKPFKYDLSRVDSSNSHCLIPLPNPNPNSDEPGWGYCTEEQLEEILLKNLEFVYNEAISKIVALGYDEDAALKAVLKNGHCYGGMDVLTNILHNSLAFLNIDNGGFAGAGDFAGTDGPVGAGFGGPVGAGFGNNDGDIDEIEPVFADLKHLEEYSLAGMVCLLQQVRPNLSKGDAMWCLLMSDLHVGKASTIEIPVPGSAGARGAAVVEAGGQLGRNPVAVKAPPLCKFHGGWGFGNGDYPTNANGILSCGPVLQREIEFPKRFDLSPQMKALLKKNVTMFAAGFRANTKQLQAKGKANVPSRSTNLDSPVVSGAEITVDPCGHSRVVDNQEAVNSVLSKFRDLNLDENLEFVAEDQKDEVIVSIFHQIKDLEKQAKERKEWAHLKALQAAKKLSSDLTELKTLRMCREETQKLKKGKQALEDTTMKRLSEMENALRKASGQVDRANGAVRRLETENAEIRAEMEASKLSASESVTACLEVAKKEKKYLKKLLAWEKQKAKLQKEISDLKDKILEDREVSAQNKQRQKEAEAKWKEELKAQEDALALVEEERRSKEAAESENKRGFEALRLKIELDFQRHKDDLSRLENDLSRLKASVRSAALHHQNTSPIKDFEGTKPQRETIAKLLLDLDDLSENEANNNRECIICMKDEVSVVFLPCAHQVMCAKCSDEYGKNGKAACPCCRVQIQQRIRVFGACS* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3759 744 Coils Coil 530 564 - -
Mal5g3759 744 Coils Coil 474 515 - -
Mal5g3759 744 Coils Coil 615 642 - -
Mal5g3759 744 SUPERFAMILY RING/U-box 681 736 - -
Mal5g3759 744 Coils Coil 669 689 - -
Mal5g3759 744 Pfam Family of unknown function (DUF6592) 94 234 IPR046527 -
Mal5g3759 744 SMART ring_2 690 729 IPR001841 -
Mal5g3759 744 Pfam Zinc finger, C3HC4 type (RING finger) 687 735 - -
Mal5g3759 744 ProSiteProfiles Zinc finger RING-type profile. 690 730 IPR001841 -
Mal5g3759 744 Coils Coil 569 606 - -
Mal5g3759 744 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 677 741 IPR013083 -
Mal5g3759 744 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 743 - -
Mal5g3759 744 PANTHER OS05G0141500 PROTEIN 1 743 IPR046934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3759 Mal-Chr5 105752370 105757025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3759 681 740 C3H Transcription Factor Family AT1G73950 41.667 2.32e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3759 - - gmx:100797917 959.518