Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3754 ATGCCAGTTCCACTTGCCCCTTATCCAACTCCACCACCACCAGCTCCATATACACCTCCTCCAACAAATGGTGCACAGAGTCAACTTGTGTGTTCTGGTTGTAGAAACCTTCTAATGTATCCAGTTGGAGCTACTTCTGTGTGCTGTGCTGTTTGCAATGCTGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCTCAGTTAGTTTGTGGAGGATGCCATACTTTACTCATGTACATCCGCGGAGCGACGAGTGTTCAATGCTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGCAAATCAGGTAGCACATGTCAACTGTGGTAACTGCAGAATGCTACTTATGTATCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTTACCTCAGTTGGGGCCTCAGCAAGCACTACTGAGCAGCAGAAGTTCAGCACCTAA 450 0.4689 MPVPLAPYPTPPPPAPYTPPPTNGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTTEQQKFST* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3754 149 PANTHER PROTEIN LSD1 1 144 IPR040319 -
Mal5g3754 149 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 67 96 IPR005735 -
Mal5g3754 149 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 28 58 IPR005735 -
Mal5g3754 149 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 105 135 IPR005735 -
Mal5g3754 149 Pfam LSD1 zinc finger 108 132 IPR005735 -
Mal5g3754 149 Pfam LSD1 zinc finger 70 94 IPR005735 -
Mal5g3754 149 Pfam LSD1 zinc finger 31 55 IPR005735 -
Mal5g3754 149 PANTHER PROTEIN LOL1 1 144 - -
Mal5g3754 149 SUPERFAMILY Multiheme cytochromes 31 129 IPR036280 -
Mal5g3754 149 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3754 Mal-Chr5 105662882 105664308 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Mal5g3754 zf-LSD1 9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3754 - - mnt:21406053 260.381